Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1650 and Dsui_1651 are separated by 153 nucleotides Dsui_1651 and Dsui_1652 are separated by 77 nucleotides Dsui_1652 and Dsui_1653 overlap by 4 nucleotides Dsui_1653 and Dsui_1654 are separated by 348 nucleotides
Dsui_1650: Dsui_1650 - copper/silver-translocating P-type ATPase, at 1,731,202 to 1,733,637
_1650
Dsui_1651: Dsui_1651 - copper chaperone, at 1,733,791 to 1,733,997
_1651
Dsui_1652: Dsui_1652 - FeoA-like protein, at 1,734,075 to 1,734,326
_1652
Dsui_1653: Dsui_1653 - ferrous iron transporter FeoB, at 1,734,323 to 1,736,323
_1653
Dsui_1654: Dsui_1654 - hypothetical protein, at 1,736,672 to 1,738,099
_1654
Position (kb)
1734
1735
1736
1737 Strain fitness (log2 ratio)
-2
-1
0
1 at 1733.424 kb on + strand at 1733.431 kb on + strand at 1733.432 kb on - strand at 1733.439 kb on - strand at 1733.479 kb on + strand at 1733.522 kb on - strand at 1733.557 kb on - strand at 1733.557 kb on - strand at 1733.663 kb on + strand at 1733.844 kb on + strand, within Dsui_1651 at 1733.944 kb on + strand, within Dsui_1651 at 1734.006 kb on + strand at 1734.138 kb on - strand, within Dsui_1652 at 1734.211 kb on + strand, within Dsui_1652 at 1734.411 kb on + strand at 1734.529 kb on + strand, within Dsui_1653 at 1734.537 kb on - strand, within Dsui_1653 at 1734.768 kb on - strand, within Dsui_1653 at 1734.773 kb on - strand, within Dsui_1653 at 1734.828 kb on - strand, within Dsui_1653 at 1734.828 kb on - strand, within Dsui_1653 at 1734.835 kb on + strand at 1734.875 kb on + strand, within Dsui_1653 at 1734.883 kb on - strand, within Dsui_1653 at 1734.941 kb on + strand, within Dsui_1653 at 1735.031 kb on + strand, within Dsui_1653 at 1735.031 kb on + strand, within Dsui_1653 at 1735.037 kb on + strand at 1735.218 kb on - strand, within Dsui_1653 at 1735.341 kb on - strand, within Dsui_1653 at 1735.384 kb on - strand, within Dsui_1653 at 1735.411 kb on - strand, within Dsui_1653 at 1735.490 kb on - strand, within Dsui_1653 at 1735.495 kb on - strand, within Dsui_1653 at 1735.770 kb on - strand, within Dsui_1653 at 1735.847 kb on + strand at 1735.971 kb on - strand, within Dsui_1653 at 1736.083 kb on + strand, within Dsui_1653 at 1736.091 kb on - strand, within Dsui_1653 at 1736.178 kb on - strand at 1736.240 kb on - strand at 1736.249 kb on + strand at 1736.389 kb on + strand at 1736.402 kb on - strand at 1736.447 kb on - strand at 1736.529 kb on + strand at 1736.855 kb on + strand, within Dsui_1654 at 1736.874 kb on + strand, within Dsui_1654 at 1736.882 kb on - strand, within Dsui_1654 at 1736.892 kb on - strand, within Dsui_1654 at 1737.097 kb on + strand, within Dsui_1654 at 1737.097 kb on + strand, within Dsui_1654 at 1737.103 kb on + strand, within Dsui_1654 at 1737.156 kb on - strand, within Dsui_1654 at 1737.279 kb on + strand, within Dsui_1654 at 1737.289 kb on + strand, within Dsui_1654
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,733,424 + -1.1 1,733,431 + -0.2 1,733,432 - -1.7 1,733,439 - -1.1 1,733,479 + -0.8 1,733,522 - -1.2 1,733,557 - -0.2 1,733,557 - +0.1 1,733,663 + +0.1 1,733,844 + Dsui_1651 0.26 -0.3 1,733,944 + Dsui_1651 0.74 -0.1 1,734,006 + -0.3 1,734,138 - Dsui_1652 0.25 +0.2 1,734,211 + Dsui_1652 0.54 +0.9 1,734,411 + -1.1 1,734,529 + Dsui_1653 0.10 +1.3 1,734,537 - Dsui_1653 0.11 -0.9 1,734,768 - Dsui_1653 0.22 +0.5 1,734,773 - Dsui_1653 0.22 -1.9 1,734,828 - Dsui_1653 0.25 -0.5 1,734,828 - Dsui_1653 0.25 -0.9 1,734,835 + -0.1 1,734,875 + Dsui_1653 0.28 +0.7 1,734,883 - Dsui_1653 0.28 +0.2 1,734,941 + Dsui_1653 0.31 +0.9 1,735,031 + Dsui_1653 0.35 -0.1 1,735,031 + Dsui_1653 0.35 -1.9 1,735,037 + -0.5 1,735,218 - Dsui_1653 0.45 -1.8 1,735,341 - Dsui_1653 0.51 +0.3 1,735,384 - Dsui_1653 0.53 +0.1 1,735,411 - Dsui_1653 0.54 -0.1 1,735,490 - Dsui_1653 0.58 -0.7 1,735,495 - Dsui_1653 0.59 -0.1 1,735,770 - Dsui_1653 0.72 -1.4 1,735,847 + +1.3 1,735,971 - Dsui_1653 0.82 -1.3 1,736,083 + Dsui_1653 0.88 -1.1 1,736,091 - Dsui_1653 0.88 -2.5 1,736,178 - -1.7 1,736,240 - -2.4 1,736,249 + -0.6 1,736,389 + -0.5 1,736,402 - -0.3 1,736,447 - -1.2 1,736,529 + +1.3 1,736,855 + Dsui_1654 0.13 -1.2 1,736,874 + Dsui_1654 0.14 +0.5 1,736,882 - Dsui_1654 0.15 -1.0 1,736,892 - Dsui_1654 0.15 -0.6 1,737,097 + Dsui_1654 0.30 -1.1 1,737,097 + Dsui_1654 0.30 -0.3 1,737,103 + Dsui_1654 0.30 -0.9 1,737,156 - Dsui_1654 0.34 -1.7 1,737,279 + Dsui_1654 0.43 -0.5 1,737,289 + Dsui_1654 0.43 -0.5
Or see this region's nucleotide sequence