Strain Fitness in Dechlorosoma suillum PS around Dsui_1462

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1461 and Dsui_1462 overlap by 4 nucleotidesDsui_1462 and Dsui_1463 are separated by 107 nucleotides Dsui_1461: Dsui_1461 - RND family efflux transporter, MFP subunit, at 1,520,429 to 1,521,598 _1461 Dsui_1462: Dsui_1462 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,521,595 to 1,522,398 _1462 Dsui_1463: Dsui_1463 - transcriptional activator of acetoin/glycerol metabolism, at 1,522,506 to 1,524,446 _1463 Position (kb) 1521 1522 1523Strain fitness (log2 ratio) -2 -1 0 1 2at 1520.622 kb on + strand, within Dsui_1461at 1520.627 kb on + strand, within Dsui_1461at 1520.628 kb on - strand, within Dsui_1461at 1520.630 kb on - strand, within Dsui_1461at 1520.635 kb on - strandat 1520.714 kb on - strandat 1520.779 kb on + strand, within Dsui_1461at 1520.787 kb on - strand, within Dsui_1461at 1520.851 kb on + strand, within Dsui_1461at 1520.951 kb on + strand, within Dsui_1461at 1520.995 kb on - strand, within Dsui_1461at 1521.016 kb on - strand, within Dsui_1461at 1521.036 kb on - strandat 1521.128 kb on - strand, within Dsui_1461at 1521.145 kb on - strand, within Dsui_1461at 1521.147 kb on + strand, within Dsui_1461at 1521.163 kb on + strand, within Dsui_1461at 1521.170 kb on - strand, within Dsui_1461at 1521.272 kb on + strand, within Dsui_1461at 1521.360 kb on - strand, within Dsui_1461at 1521.396 kb on + strand, within Dsui_1461at 1521.577 kb on + strandat 1521.869 kb on + strand, within Dsui_1462at 1522.292 kb on - strand, within Dsui_1462at 1522.530 kb on + strandat 1522.558 kb on - strandat 1522.671 kb on - strandat 1522.845 kb on - strandat 1522.871 kb on + strand, within Dsui_1463at 1522.880 kb on - strand, within Dsui_1463at 1522.995 kb on - strand, within Dsui_1463at 1523.035 kb on + strand, within Dsui_1463at 1523.241 kb on + strandat 1523.348 kb on - strand, within Dsui_1463at 1523.360 kb on + strand, within Dsui_1463at 1523.379 kb on - strand, within Dsui_1463

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,520,622 + Dsui_1461 0.16 -0.5
1,520,627 + Dsui_1461 0.17 -1.2
1,520,628 - Dsui_1461 0.17 -1.6
1,520,630 - Dsui_1461 0.17 -0.5
1,520,635 - -0.3
1,520,714 - +2.3
1,520,779 + Dsui_1461 0.30 -0.5
1,520,787 - Dsui_1461 0.31 -2.1
1,520,851 + Dsui_1461 0.36 -0.1
1,520,951 + Dsui_1461 0.45 -0.2
1,520,995 - Dsui_1461 0.48 +0.3
1,521,016 - Dsui_1461 0.50 -0.9
1,521,036 - +2.3
1,521,128 - Dsui_1461 0.60 -0.0
1,521,145 - Dsui_1461 0.61 +0.2
1,521,147 + Dsui_1461 0.61 -1.6
1,521,163 + Dsui_1461 0.63 +0.1
1,521,170 - Dsui_1461 0.63 +0.4
1,521,272 + Dsui_1461 0.72 -0.4
1,521,360 - Dsui_1461 0.80 -1.0
1,521,396 + Dsui_1461 0.83 +0.5
1,521,577 + -0.3
1,521,869 + Dsui_1462 0.34 +0.8
1,522,292 - Dsui_1462 0.87 -0.4
1,522,530 + +0.7
1,522,558 - +0.8
1,522,671 - -0.1
1,522,845 - +2.3
1,522,871 + Dsui_1463 0.19 +0.3
1,522,880 - Dsui_1463 0.19 +0.7
1,522,995 - Dsui_1463 0.25 -0.1
1,523,035 + Dsui_1463 0.27 +0.7
1,523,241 + +1.3
1,523,348 - Dsui_1463 0.43 +0.3
1,523,360 + Dsui_1463 0.44 -1.3
1,523,379 - Dsui_1463 0.45 +0.7

Or see this region's nucleotide sequence