Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1272 and Dsui_1273 are separated by 75 nucleotides Dsui_1273 and Dsui_1274 are separated by 10 nucleotides Dsui_1274 and Dsui_1275 are separated by 36 nucleotides Dsui_1275 and Dsui_1276 are separated by 25 nucleotides
Dsui_1272: Dsui_1272 - putative transcriptional regulator, at 1,336,183 to 1,336,509
_1272
Dsui_1273: Dsui_1273 - Rhodanese-related sulfurtransferase, at 1,336,585 to 1,336,998
_1273
Dsui_1274: Dsui_1274 - Glutaredoxin, GrxC family, at 1,337,009 to 1,337,275
_1274
Dsui_1275: Dsui_1275 - protein-export chaperone SecB, at 1,337,312 to 1,337,776
_1275
Dsui_1276: Dsui_1276 - hypothetical protein, at 1,337,802 to 1,338,275
_1276
Position (kb) 1337
1338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1336.059 kb on + strand at 1336.059 kb on + strand at 1336.062 kb on + strand at 1336.064 kb on + strand at 1336.067 kb on - strand at 1336.069 kb on + strand at 1336.072 kb on - strand at 1336.072 kb on - strand at 1336.109 kb on + strand at 1336.117 kb on - strand at 1336.119 kb on + strand at 1336.152 kb on - strand at 1336.180 kb on - strand at 1336.183 kb on + strand at 1336.337 kb on - strand at 1336.367 kb on - strand at 1336.377 kb on + strand, within Dsui_1272 at 1336.429 kb on - strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.476 kb on + strand, within Dsui_1272 at 1336.484 kb on - strand at 1336.497 kb on - strand at 1336.497 kb on - strand at 1336.515 kb on + strand at 1336.523 kb on - strand at 1336.523 kb on - strand at 1336.523 kb on - strand at 1336.642 kb on + strand, within Dsui_1273 at 1336.697 kb on + strand, within Dsui_1273 at 1336.700 kb on + strand, within Dsui_1273 at 1336.980 kb on + strand at 1336.992 kb on + strand at 1336.992 kb on + strand at 1336.992 kb on + strand at 1336.992 kb on + strand at 1336.994 kb on + strand at 1337.023 kb on + strand at 1337.077 kb on + strand, within Dsui_1274 at 1337.077 kb on + strand, within Dsui_1274 at 1337.104 kb on + strand, within Dsui_1274 at 1337.163 kb on + strand, within Dsui_1274 at 1337.208 kb on + strand, within Dsui_1274 at 1337.225 kb on + strand, within Dsui_1274 at 1337.405 kb on + strand, within Dsui_1275 at 1337.603 kb on + strand, within Dsui_1275 at 1337.673 kb on + strand, within Dsui_1275 at 1337.794 kb on + strand at 1338.019 kb on + strand, within Dsui_1276 at 1338.050 kb on + strand, within Dsui_1276 at 1338.050 kb on + strand, within Dsui_1276 at 1338.174 kb on + strand, within Dsui_1276 at 1338.195 kb on + strand, within Dsui_1276
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,336,059 + -0.5 1,336,059 + -0.6 1,336,062 + -0.4 1,336,064 + -0.9 1,336,067 - -0.5 1,336,069 + -0.9 1,336,072 - +0.4 1,336,072 - -1.6 1,336,109 + +0.1 1,336,117 - +2.3 1,336,119 + -0.3 1,336,152 - -0.3 1,336,180 - -0.3 1,336,183 + -0.1 1,336,337 - +1.0 1,336,367 - +0.7 1,336,377 + Dsui_1272 0.59 -1.0 1,336,429 - Dsui_1272 0.75 -0.9 1,336,445 + Dsui_1272 0.80 -0.6 1,336,445 + Dsui_1272 0.80 -0.6 1,336,445 + Dsui_1272 0.80 -0.8 1,336,476 + Dsui_1272 0.90 -0.7 1,336,484 - +0.0 1,336,497 - -0.7 1,336,497 - -0.9 1,336,515 + -0.3 1,336,523 - -0.3 1,336,523 - -0.1 1,336,523 - -0.3 1,336,642 + Dsui_1273 0.14 -0.4 1,336,697 + Dsui_1273 0.27 +0.1 1,336,700 + Dsui_1273 0.28 -1.4 1,336,980 + -0.1 1,336,992 + -0.1 1,336,992 + -0.7 1,336,992 + -0.8 1,336,992 + -0.4 1,336,994 + -0.3 1,337,023 + -0.7 1,337,077 + Dsui_1274 0.25 +0.8 1,337,077 + Dsui_1274 0.25 -0.7 1,337,104 + Dsui_1274 0.36 -0.9 1,337,163 + Dsui_1274 0.58 -0.2 1,337,208 + Dsui_1274 0.75 -0.6 1,337,225 + Dsui_1274 0.81 -0.1 1,337,405 + Dsui_1275 0.20 -1.5 1,337,603 + Dsui_1275 0.63 -2.1 1,337,673 + Dsui_1275 0.78 +0.5 1,337,794 + -0.9 1,338,019 + Dsui_1276 0.46 +0.6 1,338,050 + Dsui_1276 0.52 -0.4 1,338,050 + Dsui_1276 0.52 -0.4 1,338,174 + Dsui_1276 0.78 -0.7 1,338,195 + Dsui_1276 0.83 -0.6
Or see this region's nucleotide sequence