Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1250 and Dsui_1251 overlap by 8 nucleotides Dsui_1251 and Dsui_1252 are separated by 12 nucleotides Dsui_1252 and Dsui_1253 are separated by 120 nucleotides
Dsui_1250: Dsui_1250 - sulfate permease-like transporter, MFS superfamily, at 1,312,264 to 1,313,931
_1250
Dsui_1251: Dsui_1251 - acylphosphatase, at 1,313,924 to 1,314,211
_1251
Dsui_1252: Dsui_1252 - hypothetical protein, at 1,314,224 to 1,314,817
_1252
Dsui_1253: Dsui_1253 - peroxiredoxin, at 1,314,938 to 1,315,537
_1253
Position (kb)
1313
1314
1315 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1313.009 kb on + strand, within Dsui_1250 at 1313.017 kb on - strand, within Dsui_1250 at 1313.063 kb on - strand, within Dsui_1250 at 1313.165 kb on + strand, within Dsui_1250 at 1313.213 kb on + strand, within Dsui_1250 at 1313.221 kb on - strand, within Dsui_1250 at 1313.265 kb on - strand, within Dsui_1250 at 1313.266 kb on - strand, within Dsui_1250 at 1313.272 kb on - strand, within Dsui_1250 at 1313.274 kb on + strand, within Dsui_1250 at 1313.485 kb on + strand, within Dsui_1250 at 1313.487 kb on - strand, within Dsui_1250 at 1313.493 kb on - strand, within Dsui_1250 at 1313.516 kb on + strand at 1313.516 kb on + strand, within Dsui_1250 at 1313.524 kb on - strand, within Dsui_1250 at 1313.539 kb on + strand, within Dsui_1250 at 1313.539 kb on + strand, within Dsui_1250 at 1313.547 kb on - strand at 1313.625 kb on + strand, within Dsui_1250 at 1313.672 kb on + strand, within Dsui_1250 at 1313.672 kb on + strand, within Dsui_1250 at 1313.720 kb on + strand, within Dsui_1250 at 1313.747 kb on - strand, within Dsui_1250 at 1313.958 kb on + strand, within Dsui_1251 at 1314.002 kb on + strand, within Dsui_1251 at 1314.010 kb on - strand, within Dsui_1251 at 1314.067 kb on - strand at 1314.186 kb on + strand at 1314.196 kb on + strand at 1314.206 kb on - strand at 1314.260 kb on + strand at 1314.339 kb on - strand, within Dsui_1252 at 1314.371 kb on + strand, within Dsui_1252 at 1314.371 kb on + strand, within Dsui_1252 at 1314.376 kb on - strand at 1314.384 kb on - strand, within Dsui_1252 at 1314.443 kb on - strand, within Dsui_1252 at 1314.458 kb on - strand at 1314.551 kb on + strand, within Dsui_1252 at 1314.559 kb on - strand, within Dsui_1252 at 1314.598 kb on + strand, within Dsui_1252 at 1314.685 kb on - strand at 1314.803 kb on - strand at 1314.837 kb on - strand at 1314.954 kb on + strand at 1314.954 kb on + strand at 1314.964 kb on - strand at 1315.038 kb on - strand, within Dsui_1253 at 1315.038 kb on - strand, within Dsui_1253 at 1315.038 kb on - strand, within Dsui_1253 at 1315.038 kb on - strand at 1315.089 kb on + strand, within Dsui_1253 at 1315.104 kb on + strand, within Dsui_1253 at 1315.148 kb on + strand, within Dsui_1253 at 1315.148 kb on + strand, within Dsui_1253 at 1315.148 kb on + strand, within Dsui_1253 at 1315.156 kb on - strand at 1315.156 kb on - strand, within Dsui_1253 at 1315.156 kb on - strand at 1315.158 kb on + strand, within Dsui_1253 at 1315.166 kb on - strand, within Dsui_1253
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,313,009 + Dsui_1250 0.45 -1.2 1,313,017 - Dsui_1250 0.45 +0.4 1,313,063 - Dsui_1250 0.48 +1.0 1,313,165 + Dsui_1250 0.54 -0.5 1,313,213 + Dsui_1250 0.57 -1.1 1,313,221 - Dsui_1250 0.57 +0.3 1,313,265 - Dsui_1250 0.60 -0.1 1,313,266 - Dsui_1250 0.60 -0.3 1,313,272 - Dsui_1250 0.60 +1.2 1,313,274 + Dsui_1250 0.61 -0.3 1,313,485 + Dsui_1250 0.73 +0.2 1,313,487 - Dsui_1250 0.73 -0.7 1,313,493 - Dsui_1250 0.74 -0.3 1,313,516 + -0.1 1,313,516 + Dsui_1250 0.75 +0.7 1,313,524 - Dsui_1250 0.76 -1.6 1,313,539 + Dsui_1250 0.76 -1.7 1,313,539 + Dsui_1250 0.76 -1.1 1,313,547 - +1.5 1,313,625 + Dsui_1250 0.82 -0.8 1,313,672 + Dsui_1250 0.84 -0.3 1,313,672 + Dsui_1250 0.84 -0.1 1,313,720 + Dsui_1250 0.87 -0.5 1,313,747 - Dsui_1250 0.89 -1.3 1,313,958 + Dsui_1251 0.12 -0.3 1,314,002 + Dsui_1251 0.27 -1.0 1,314,010 - Dsui_1251 0.30 -1.3 1,314,067 - +0.7 1,314,186 + +0.2 1,314,196 + -0.2 1,314,206 - +2.3 1,314,260 + -0.0 1,314,339 - Dsui_1252 0.19 -0.4 1,314,371 + Dsui_1252 0.25 -1.2 1,314,371 + Dsui_1252 0.25 -0.1 1,314,376 - +0.3 1,314,384 - Dsui_1252 0.27 +0.1 1,314,443 - Dsui_1252 0.37 +0.6 1,314,458 - -0.3 1,314,551 + Dsui_1252 0.55 +1.4 1,314,559 - Dsui_1252 0.56 -2.3 1,314,598 + Dsui_1252 0.63 +0.4 1,314,685 - +0.9 1,314,803 - -0.3 1,314,837 - -1.4 1,314,954 + -0.2 1,314,954 + +0.1 1,314,964 - -0.5 1,315,038 - Dsui_1253 0.17 -0.5 1,315,038 - Dsui_1253 0.17 -0.3 1,315,038 - Dsui_1253 0.17 +1.3 1,315,038 - +0.3 1,315,089 + Dsui_1253 0.25 +0.5 1,315,104 + Dsui_1253 0.28 +0.4 1,315,148 + Dsui_1253 0.35 +0.2 1,315,148 + Dsui_1253 0.35 -0.1 1,315,148 + Dsui_1253 0.35 +0.3 1,315,156 - +1.7 1,315,156 - Dsui_1253 0.36 -0.1 1,315,156 - +0.7 1,315,158 + Dsui_1253 0.37 +0.2 1,315,166 - Dsui_1253 0.38 -0.6
Or see this region's nucleotide sequence