Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1235 and Dsui_1236 overlap by 4 nucleotides Dsui_1236 and Dsui_1237 are separated by 8 nucleotides Dsui_1237 and Dsui_1238 are separated by 242 nucleotides
Dsui_1235: Dsui_1235 - hypothetical protein, at 1,293,733 to 1,294,290
_1235
Dsui_1236: Dsui_1236 - molybdenum cofactor synthesis domain protein, at 1,294,287 to 1,294,880
_1236
Dsui_1237: Dsui_1237 - hypothetical protein, at 1,294,889 to 1,296,406
_1237
Dsui_1238: Dsui_1238 - thymidylate synthase, at 1,296,649 to 1,297,443
_1238
Position (kb)
1294
1295
1296
1297 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1294.011 kb on + strand, within Dsui_1235 at 1294.109 kb on + strand, within Dsui_1235 at 1294.119 kb on - strand, within Dsui_1235 at 1294.166 kb on + strand, within Dsui_1235 at 1294.188 kb on - strand at 1294.325 kb on - strand at 1294.393 kb on + strand, within Dsui_1236 at 1294.451 kb on + strand, within Dsui_1236 at 1294.554 kb on + strand, within Dsui_1236 at 1294.567 kb on - strand, within Dsui_1236 at 1294.648 kb on + strand, within Dsui_1236 at 1294.671 kb on + strand, within Dsui_1236 at 1294.705 kb on - strand, within Dsui_1236 at 1294.742 kb on + strand, within Dsui_1236 at 1294.750 kb on - strand, within Dsui_1236 at 1294.757 kb on - strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.786 kb on + strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.794 kb on - strand, within Dsui_1236 at 1294.885 kb on + strand at 1294.906 kb on + strand at 1294.906 kb on + strand at 1294.914 kb on - strand at 1295.044 kb on - strand, within Dsui_1237 at 1295.325 kb on - strand, within Dsui_1237 at 1295.471 kb on + strand, within Dsui_1237 at 1295.471 kb on + strand, within Dsui_1237 at 1295.478 kb on + strand, within Dsui_1237 at 1295.479 kb on - strand, within Dsui_1237 at 1295.557 kb on + strand, within Dsui_1237 at 1295.687 kb on + strand, within Dsui_1237 at 1295.734 kb on + strand, within Dsui_1237 at 1295.734 kb on + strand, within Dsui_1237 at 1295.815 kb on + strand, within Dsui_1237 at 1295.849 kb on + strand, within Dsui_1237 at 1295.852 kb on - strand at 1295.854 kb on + strand, within Dsui_1237 at 1295.862 kb on - strand, within Dsui_1237 at 1295.862 kb on - strand, within Dsui_1237 at 1295.920 kb on - strand, within Dsui_1237 at 1295.920 kb on - strand, within Dsui_1237 at 1296.131 kb on - strand, within Dsui_1237 at 1296.162 kb on + strand, within Dsui_1237 at 1296.197 kb on + strand, within Dsui_1237 at 1296.201 kb on - strand, within Dsui_1237 at 1296.236 kb on - strand, within Dsui_1237 at 1296.264 kb on - strand at 1296.317 kb on + strand at 1296.362 kb on + strand at 1296.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,294,011 + Dsui_1235 0.50 -0.8 1,294,109 + Dsui_1235 0.67 -2.5 1,294,119 - Dsui_1235 0.69 -1.1 1,294,166 + Dsui_1235 0.78 -0.9 1,294,188 - -0.8 1,294,325 - -2.6 1,294,393 + Dsui_1236 0.18 -1.9 1,294,451 + Dsui_1236 0.28 -2.1 1,294,554 + Dsui_1236 0.45 -1.8 1,294,567 - Dsui_1236 0.47 -2.4 1,294,648 + Dsui_1236 0.61 -1.8 1,294,671 + Dsui_1236 0.65 -0.9 1,294,705 - Dsui_1236 0.70 -0.8 1,294,742 + Dsui_1236 0.77 -2.8 1,294,750 - Dsui_1236 0.78 -1.5 1,294,757 - Dsui_1236 0.79 -2.6 1,294,786 + Dsui_1236 0.84 -2.0 1,294,786 + Dsui_1236 0.84 -2.7 1,294,786 + Dsui_1236 0.84 -2.6 1,294,794 - Dsui_1236 0.85 -2.2 1,294,794 - Dsui_1236 0.85 -3.9 1,294,794 - Dsui_1236 0.85 -2.4 1,294,885 + -1.1 1,294,906 + -0.4 1,294,906 + -0.2 1,294,914 - -0.3 1,295,044 - Dsui_1237 0.10 +0.5 1,295,325 - Dsui_1237 0.29 -0.4 1,295,471 + Dsui_1237 0.38 +0.2 1,295,471 + Dsui_1237 0.38 +0.1 1,295,478 + Dsui_1237 0.39 -0.2 1,295,479 - Dsui_1237 0.39 -0.3 1,295,557 + Dsui_1237 0.44 +0.1 1,295,687 + Dsui_1237 0.53 +1.2 1,295,734 + Dsui_1237 0.56 +0.9 1,295,734 + Dsui_1237 0.56 +1.1 1,295,815 + Dsui_1237 0.61 -0.4 1,295,849 + Dsui_1237 0.63 +0.2 1,295,852 - -0.1 1,295,854 + Dsui_1237 0.64 +0.2 1,295,862 - Dsui_1237 0.64 -0.1 1,295,862 - Dsui_1237 0.64 +0.2 1,295,920 - Dsui_1237 0.68 +2.2 1,295,920 - Dsui_1237 0.68 +0.9 1,296,131 - Dsui_1237 0.82 +1.2 1,296,162 + Dsui_1237 0.84 -1.4 1,296,197 + Dsui_1237 0.86 -1.1 1,296,201 - Dsui_1237 0.86 +0.2 1,296,236 - Dsui_1237 0.89 -1.7 1,296,264 - +0.7 1,296,317 + +0.3 1,296,362 + -0.3 1,296,527 - -1.1
Or see this region's nucleotide sequence