Strain Fitness in Dechlorosoma suillum PS around Dsui_1227

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1225 and Dsui_1226 are separated by 103 nucleotidesDsui_1226 and Dsui_1227 are separated by 250 nucleotidesDsui_1227 and Dsui_1228 are separated by 147 nucleotides Dsui_1225: Dsui_1225 - sporulation related protein, at 1,281,412 to 1,282,305 _1225 Dsui_1226: Dsui_1226 - hypothetical protein, at 1,282,409 to 1,282,768 _1226 Dsui_1227: Dsui_1227 - DNA/RNA helicase, superfamily I, at 1,283,019 to 1,285,226 _1227 Dsui_1228: Dsui_1228 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,285,374 to 1,286,645 _1228 Position (kb) 1283 1284 1285 1286Strain fitness (log2 ratio) -2 -1 0 1 2at 1282.104 kb on + strand, within Dsui_1225at 1282.435 kb on + strandat 1282.461 kb on - strand, within Dsui_1226at 1282.533 kb on - strand, within Dsui_1226at 1282.544 kb on + strand, within Dsui_1226at 1282.579 kb on + strand, within Dsui_1226at 1282.618 kb on + strand, within Dsui_1226at 1282.777 kb on + strandat 1282.825 kb on - strandat 1282.843 kb on - strandat 1282.964 kb on + strandat 1282.969 kb on + strandat 1282.975 kb on + strandat 1282.983 kb on - strandat 1283.020 kb on + strandat 1283.054 kb on + strandat 1283.091 kb on + strandat 1283.257 kb on + strand, within Dsui_1227at 1283.493 kb on - strandat 1283.604 kb on - strandat 1283.694 kb on + strand, within Dsui_1227at 1283.719 kb on - strandat 1283.806 kb on + strand, within Dsui_1227at 1283.811 kb on + strand, within Dsui_1227at 1283.917 kb on + strand, within Dsui_1227at 1284.142 kb on - strand, within Dsui_1227at 1284.159 kb on + strand, within Dsui_1227at 1284.615 kb on - strandat 1284.732 kb on + strand, within Dsui_1227at 1284.750 kb on + strand, within Dsui_1227at 1284.885 kb on + strand, within Dsui_1227at 1284.987 kb on + strand, within Dsui_1227at 1285.179 kb on + strandat 1285.239 kb on - strandat 1285.264 kb on - strandat 1285.574 kb on - strand, within Dsui_1228at 1285.577 kb on + strand, within Dsui_1228at 1285.596 kb on + strand, within Dsui_1228at 1285.614 kb on + strand, within Dsui_1228at 1285.707 kb on - strand, within Dsui_1228at 1286.095 kb on + strand, within Dsui_1228

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,282,104 + Dsui_1225 0.77 -1.4
1,282,435 + -0.5
1,282,461 - Dsui_1226 0.14 -0.3
1,282,533 - Dsui_1226 0.34 -0.8
1,282,544 + Dsui_1226 0.38 -1.2
1,282,579 + Dsui_1226 0.47 -0.4
1,282,618 + Dsui_1226 0.58 -0.4
1,282,777 + +2.2
1,282,825 - -0.3
1,282,843 - +0.1
1,282,964 + -1.5
1,282,969 + -1.0
1,282,975 + -0.3
1,282,983 - +1.2
1,283,020 + -0.5
1,283,054 + -0.9
1,283,091 + -0.6
1,283,257 + Dsui_1227 0.11 -0.4
1,283,493 - +0.6
1,283,604 - -0.6
1,283,694 + Dsui_1227 0.31 -1.3
1,283,719 - +1.2
1,283,806 + Dsui_1227 0.36 -0.0
1,283,811 + Dsui_1227 0.36 -1.2
1,283,917 + Dsui_1227 0.41 -0.5
1,284,142 - Dsui_1227 0.51 +0.2
1,284,159 + Dsui_1227 0.52 +0.4
1,284,615 - +1.2
1,284,732 + Dsui_1227 0.78 -1.0
1,284,750 + Dsui_1227 0.78 -1.6
1,284,885 + Dsui_1227 0.85 -1.3
1,284,987 + Dsui_1227 0.89 +0.1
1,285,179 + -0.1
1,285,239 - -1.1
1,285,264 - -0.4
1,285,574 - Dsui_1228 0.16 -1.0
1,285,577 + Dsui_1228 0.16 +0.5
1,285,596 + Dsui_1228 0.17 -0.9
1,285,614 + Dsui_1228 0.19 -0.5
1,285,707 - Dsui_1228 0.26 -2.7
1,286,095 + Dsui_1228 0.57 -1.5

Or see this region's nucleotide sequence