Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1225 and Dsui_1226 are separated by 103 nucleotides Dsui_1226 and Dsui_1227 are separated by 250 nucleotides Dsui_1227 and Dsui_1228 are separated by 147 nucleotides
Dsui_1225: Dsui_1225 - sporulation related protein, at 1,281,412 to 1,282,305
_1225
Dsui_1226: Dsui_1226 - hypothetical protein, at 1,282,409 to 1,282,768
_1226
Dsui_1227: Dsui_1227 - DNA/RNA helicase, superfamily I, at 1,283,019 to 1,285,226
_1227
Dsui_1228: Dsui_1228 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,285,374 to 1,286,645
_1228
Position (kb)
1283
1284
1285
1286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1282.104 kb on + strand, within Dsui_1225 at 1282.435 kb on + strand at 1282.461 kb on - strand, within Dsui_1226 at 1282.533 kb on - strand, within Dsui_1226 at 1282.544 kb on + strand, within Dsui_1226 at 1282.579 kb on + strand, within Dsui_1226 at 1282.618 kb on + strand, within Dsui_1226 at 1282.777 kb on + strand at 1282.825 kb on - strand at 1282.843 kb on - strand at 1282.964 kb on + strand at 1282.969 kb on + strand at 1282.975 kb on + strand at 1282.983 kb on - strand at 1283.020 kb on + strand at 1283.054 kb on + strand at 1283.091 kb on + strand at 1283.257 kb on + strand, within Dsui_1227 at 1283.493 kb on - strand at 1283.604 kb on - strand at 1283.694 kb on + strand, within Dsui_1227 at 1283.719 kb on - strand at 1283.806 kb on + strand, within Dsui_1227 at 1283.811 kb on + strand, within Dsui_1227 at 1283.917 kb on + strand, within Dsui_1227 at 1284.142 kb on - strand, within Dsui_1227 at 1284.159 kb on + strand, within Dsui_1227 at 1284.615 kb on - strand at 1284.732 kb on + strand, within Dsui_1227 at 1284.750 kb on + strand, within Dsui_1227 at 1284.885 kb on + strand, within Dsui_1227 at 1284.987 kb on + strand, within Dsui_1227 at 1285.179 kb on + strand at 1285.239 kb on - strand at 1285.264 kb on - strand at 1285.574 kb on - strand, within Dsui_1228 at 1285.577 kb on + strand, within Dsui_1228 at 1285.596 kb on + strand, within Dsui_1228 at 1285.614 kb on + strand, within Dsui_1228 at 1285.707 kb on - strand, within Dsui_1228 at 1286.095 kb on + strand, within Dsui_1228
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,282,104 + Dsui_1225 0.77 -1.4 1,282,435 + -0.5 1,282,461 - Dsui_1226 0.14 -0.3 1,282,533 - Dsui_1226 0.34 -0.8 1,282,544 + Dsui_1226 0.38 -1.2 1,282,579 + Dsui_1226 0.47 -0.4 1,282,618 + Dsui_1226 0.58 -0.4 1,282,777 + +2.2 1,282,825 - -0.3 1,282,843 - +0.1 1,282,964 + -1.5 1,282,969 + -1.0 1,282,975 + -0.3 1,282,983 - +1.2 1,283,020 + -0.5 1,283,054 + -0.9 1,283,091 + -0.6 1,283,257 + Dsui_1227 0.11 -0.4 1,283,493 - +0.6 1,283,604 - -0.6 1,283,694 + Dsui_1227 0.31 -1.3 1,283,719 - +1.2 1,283,806 + Dsui_1227 0.36 -0.0 1,283,811 + Dsui_1227 0.36 -1.2 1,283,917 + Dsui_1227 0.41 -0.5 1,284,142 - Dsui_1227 0.51 +0.2 1,284,159 + Dsui_1227 0.52 +0.4 1,284,615 - +1.2 1,284,732 + Dsui_1227 0.78 -1.0 1,284,750 + Dsui_1227 0.78 -1.6 1,284,885 + Dsui_1227 0.85 -1.3 1,284,987 + Dsui_1227 0.89 +0.1 1,285,179 + -0.1 1,285,239 - -1.1 1,285,264 - -0.4 1,285,574 - Dsui_1228 0.16 -1.0 1,285,577 + Dsui_1228 0.16 +0.5 1,285,596 + Dsui_1228 0.17 -0.9 1,285,614 + Dsui_1228 0.19 -0.5 1,285,707 - Dsui_1228 0.26 -2.7 1,286,095 + Dsui_1228 0.57 -1.5
Or see this region's nucleotide sequence