Strain Fitness in Dechlorosoma suillum PS around Dsui_1210

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1209 and Dsui_1210 are separated by 80 nucleotidesDsui_1210 and Dsui_1211 are separated by 40 nucleotidesDsui_1211 and Dsui_1212 are separated by 93 nucleotidesDsui_1212 and Dsui_1213 are separated by 113 nucleotides Dsui_1209: Dsui_1209 - RNA polymerase sigma factor, sigma-70 family, at 1,265,765 to 1,267,735 _1209 Dsui_1210: Dsui_1210 - DNA primase, catalytic core, at 1,267,816 to 1,269,570 _1210 Dsui_1211: Dsui_1211 - hypothetical protein, at 1,269,611 to 1,270,057 _1211 Dsui_1212: Dsui_1212 - ribosomal protein S21, at 1,270,151 to 1,270,363 _1212 Dsui_1213: Dsui_1213 - putative glycoprotease GCP, at 1,270,477 to 1,271,505 _1213 Position (kb) 1267 1268 1269 1270Strain fitness (log2 ratio) -1 0 1 2at 1269.627 kb on + strandat 1269.634 kb on - strandat 1269.686 kb on - strand, within Dsui_1211at 1269.686 kb on - strand, within Dsui_1211at 1269.686 kb on - strand, within Dsui_1211at 1269.741 kb on + strand, within Dsui_1211at 1269.749 kb on - strand, within Dsui_1211at 1270.028 kb on - strandat 1270.060 kb on - strandat 1270.148 kb on - strandat 1270.461 kb on + strandat 1270.469 kb on - strandat 1270.469 kb on - strandat 1270.469 kb on - strandat 1270.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,269,627 + +1.2
1,269,634 - -1.1
1,269,686 - Dsui_1211 0.17 +0.7
1,269,686 - Dsui_1211 0.17 -0.4
1,269,686 - Dsui_1211 0.17 -0.3
1,269,741 + Dsui_1211 0.29 -0.1
1,269,749 - Dsui_1211 0.31 +0.1
1,270,028 - -0.6
1,270,060 - +1.2
1,270,148 - -1.3
1,270,461 + +0.9
1,270,469 - +0.2
1,270,469 - -1.0
1,270,469 - -0.5
1,270,469 - +2.2

Or see this region's nucleotide sequence