Strain Fitness in Dechlorosoma suillum PS around Dsui_1041

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1040 and Dsui_1041 are separated by 25 nucleotidesDsui_1041 and Dsui_1042 are separated by 5 nucleotidesDsui_1042 and Dsui_1043 are separated by 87 nucleotides Dsui_1040: Dsui_1040 - glutamyl-queuosine tRNA(Asp) synthetase, at 1,071,621 to 1,072,532 _1040 Dsui_1041: Dsui_1041 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,072,558 to 1,073,718 _1041 Dsui_1042: Dsui_1042 - metal-dependent hydrolase, at 1,073,724 to 1,074,479 _1042 Dsui_1043: Dsui_1043 - quinolinate synthetase complex, A subunit, at 1,074,567 to 1,075,664 _1043 Position (kb) 1072 1073 1074Strain fitness (log2 ratio) -2 -1 0 1at 1071.570 kb on + strandat 1071.804 kb on + strand, within Dsui_1040at 1071.896 kb on - strand, within Dsui_1040at 1071.956 kb on + strand, within Dsui_1040at 1071.989 kb on + strand, within Dsui_1040at 1072.035 kb on + strand, within Dsui_1040at 1072.105 kb on + strand, within Dsui_1040at 1072.181 kb on + strand, within Dsui_1040at 1072.187 kb on + strand, within Dsui_1040at 1072.269 kb on - strand, within Dsui_1040at 1072.351 kb on + strand, within Dsui_1040at 1072.466 kb on + strandat 1072.484 kb on + strandat 1072.491 kb on - strandat 1072.530 kb on - strandat 1072.671 kb on + strandat 1072.698 kb on + strand, within Dsui_1041at 1072.724 kb on - strand, within Dsui_1041at 1072.813 kb on + strand, within Dsui_1041at 1072.868 kb on + strand, within Dsui_1041at 1072.913 kb on + strand, within Dsui_1041at 1072.942 kb on + strand, within Dsui_1041at 1073.053 kb on + strand, within Dsui_1041at 1073.280 kb on + strand, within Dsui_1041at 1073.364 kb on - strand, within Dsui_1041at 1073.526 kb on + strandat 1073.546 kb on + strand, within Dsui_1041at 1073.672 kb on + strandat 1073.672 kb on + strandat 1073.720 kb on - strandat 1073.726 kb on + strandat 1073.731 kb on + strandat 1073.876 kb on - strand, within Dsui_1042at 1073.939 kb on + strand, within Dsui_1042at 1074.303 kb on + strand, within Dsui_1042at 1074.329 kb on + strand, within Dsui_1042at 1074.412 kb on - strandat 1074.454 kb on + strandat 1074.462 kb on - strandat 1074.464 kb on + strandat 1074.472 kb on - strandat 1074.497 kb on + strandat 1074.505 kb on + strandat 1074.553 kb on + strandat 1074.561 kb on - strandat 1074.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,071,570 + -0.2
1,071,804 + Dsui_1040 0.20 -0.3
1,071,896 - Dsui_1040 0.30 -1.1
1,071,956 + Dsui_1040 0.37 -1.2
1,071,989 + Dsui_1040 0.40 +0.1
1,072,035 + Dsui_1040 0.45 +1.3
1,072,105 + Dsui_1040 0.53 -1.1
1,072,181 + Dsui_1040 0.61 +1.7
1,072,187 + Dsui_1040 0.62 -1.7
1,072,269 - Dsui_1040 0.71 +0.8
1,072,351 + Dsui_1040 0.80 -0.7
1,072,466 + -1.7
1,072,484 + -0.7
1,072,491 - -0.6
1,072,530 - -2.4
1,072,671 + +0.7
1,072,698 + Dsui_1041 0.12 -0.3
1,072,724 - Dsui_1041 0.14 -1.1
1,072,813 + Dsui_1041 0.22 -1.3
1,072,868 + Dsui_1041 0.27 -1.4
1,072,913 + Dsui_1041 0.31 -1.2
1,072,942 + Dsui_1041 0.33 -0.6
1,073,053 + Dsui_1041 0.43 -0.9
1,073,280 + Dsui_1041 0.62 -1.3
1,073,364 - Dsui_1041 0.69 +0.5
1,073,526 + +1.3
1,073,546 + Dsui_1041 0.85 -2.0
1,073,672 + -1.9
1,073,672 + +0.1
1,073,720 - -1.8
1,073,726 + -1.9
1,073,731 + -0.6
1,073,876 - Dsui_1042 0.20 -1.6
1,073,939 + Dsui_1042 0.28 -2.1
1,074,303 + Dsui_1042 0.77 -0.9
1,074,329 + Dsui_1042 0.80 -0.7
1,074,412 - -0.5
1,074,454 + +0.1
1,074,462 - -1.4
1,074,464 + +0.0
1,074,472 - -1.6
1,074,497 + -0.5
1,074,505 + -1.1
1,074,553 + -0.4
1,074,561 - -0.7
1,074,563 - -0.6

Or see this region's nucleotide sequence