Strain Fitness in Dechlorosoma suillum PS around Dsui_1019

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1017 and Dsui_1018 are separated by 588 nucleotidesDsui_1018 and Dsui_1019 overlap by 30 nucleotidesDsui_1019 and Dsui_1021 are separated by 796 nucleotides Dsui_1017: Dsui_1017 - hypothetical protein, at 1,050,402 to 1,050,809 _1017 Dsui_1018: Dsui_1018 - hypothetical protein, at 1,051,398 to 1,051,616 _1018 Dsui_1019: Dsui_1019 - transposase, at 1,051,587 to 1,052,387 _1019 Dsui_1021: Dsui_1021 - NAD(FAD)-dependent dehydrogenase, at 1,053,184 to 1,054,518 _1021 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -2 -1 0 1 2at 1050.613 kb on - strand, within Dsui_1017at 1050.669 kb on - strand, within Dsui_1017at 1050.687 kb on + strand, within Dsui_1017at 1050.694 kb on - strand, within Dsui_1017at 1050.695 kb on - strand, within Dsui_1017at 1050.695 kb on - strand, within Dsui_1017at 1050.697 kb on + strand, within Dsui_1017at 1050.698 kb on + strand, within Dsui_1017at 1050.743 kb on - strand, within Dsui_1017at 1050.821 kb on - strandat 1050.835 kb on - strandat 1050.847 kb on - strandat 1050.863 kb on + strandat 1050.938 kb on + strandat 1050.938 kb on + strandat 1050.943 kb on + strandat 1050.986 kb on + strandat 1051.031 kb on - strandat 1051.031 kb on - strandat 1051.044 kb on + strandat 1051.059 kb on - strandat 1051.139 kb on + strandat 1051.142 kb on + strandat 1051.142 kb on + strandat 1051.142 kb on + strandat 1051.150 kb on - strandat 1051.253 kb on + strandat 1051.253 kb on + strandat 1051.254 kb on - strandat 1051.285 kb on + strandat 1051.293 kb on - strandat 1051.297 kb on - strandat 1051.385 kb on + strandat 1051.454 kb on + strand, within Dsui_1018at 1051.475 kb on + strand, within Dsui_1018at 1051.527 kb on - strand, within Dsui_1018at 1051.535 kb on + strand, within Dsui_1018at 1051.543 kb on - strand, within Dsui_1018at 1051.554 kb on - strand, within Dsui_1018at 1051.554 kb on - strand, within Dsui_1018at 1051.572 kb on - strand, within Dsui_1018at 1051.573 kb on - strand, within Dsui_1018at 1051.573 kb on - strand, within Dsui_1018at 1051.594 kb on - strandat 1052.745 kb on + strandat 1052.745 kb on + strandat 1052.745 kb on + strandat 1052.753 kb on - strandat 1052.753 kb on - strandat 1052.768 kb on + strandat 1052.789 kb on + strandat 1052.792 kb on - strandat 1052.797 kb on - strandat 1052.799 kb on - strandat 1053.005 kb on + strandat 1053.009 kb on + strandat 1053.028 kb on + strandat 1053.072 kb on - strandat 1053.091 kb on + strandat 1053.099 kb on + strandat 1053.115 kb on + strandat 1053.123 kb on - strandat 1053.173 kb on - strandat 1053.175 kb on + strandat 1053.175 kb on + strandat 1053.183 kb on - strandat 1053.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,050,613 - Dsui_1017 0.52 -0.4
1,050,669 - Dsui_1017 0.65 -0.4
1,050,687 + Dsui_1017 0.70 -0.9
1,050,694 - Dsui_1017 0.72 -0.1
1,050,695 - Dsui_1017 0.72 -0.3
1,050,695 - Dsui_1017 0.72 -1.2
1,050,697 + Dsui_1017 0.72 -0.3
1,050,698 + Dsui_1017 0.73 -0.3
1,050,743 - Dsui_1017 0.84 -0.3
1,050,821 - -0.2
1,050,835 - -0.2
1,050,847 - +0.0
1,050,863 + -0.1
1,050,938 + +0.7
1,050,938 + -0.9
1,050,943 + +0.5
1,050,986 + -0.1
1,051,031 - +2.3
1,051,031 - -0.3
1,051,044 + +0.3
1,051,059 - -1.1
1,051,139 + +0.1
1,051,142 + +0.1
1,051,142 + -0.1
1,051,142 + -0.3
1,051,150 - -0.6
1,051,253 + -0.3
1,051,253 + -0.3
1,051,254 - -0.4
1,051,285 + -0.0
1,051,293 - -0.0
1,051,297 - +0.1
1,051,385 + +0.4
1,051,454 + Dsui_1018 0.26 -0.6
1,051,475 + Dsui_1018 0.35 -0.5
1,051,527 - Dsui_1018 0.59 -0.7
1,051,535 + Dsui_1018 0.63 -0.9
1,051,543 - Dsui_1018 0.66 -0.7
1,051,554 - Dsui_1018 0.71 -0.2
1,051,554 - Dsui_1018 0.71 -0.2
1,051,572 - Dsui_1018 0.79 -0.4
1,051,573 - Dsui_1018 0.80 -1.0
1,051,573 - Dsui_1018 0.80 +0.1
1,051,594 - -0.2
1,052,745 + -0.2
1,052,745 + -0.3
1,052,745 + -1.2
1,052,753 - -0.2
1,052,753 - -0.5
1,052,768 + -2.2
1,052,789 + -0.2
1,052,792 - -0.7
1,052,797 - -0.1
1,052,799 - +0.2
1,053,005 + -0.6
1,053,009 + +0.4
1,053,028 + -0.9
1,053,072 - +0.3
1,053,091 + -0.4
1,053,099 + +0.0
1,053,115 + +0.4
1,053,123 - -0.2
1,053,173 - +0.2
1,053,175 + -0.7
1,053,175 + +1.3
1,053,183 - +0.3
1,053,287 + -1.7

Or see this region's nucleotide sequence