Strain Fitness in Dechlorosoma suillum PS around Dsui_0994

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0992 and Dsui_0993 overlap by 8 nucleotidesDsui_0993 and Dsui_0994 overlap by 1 nucleotidesDsui_0994 and Dsui_0995 are separated by 18 nucleotides Dsui_0992: Dsui_0992 - putative membrane protein, at 1,019,131 to 1,019,706 _0992 Dsui_0993: Dsui_0993 - polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase, at 1,019,699 to 1,020,316 _0993 Dsui_0994: Dsui_0994 - peptidase S16, lon domain protein, at 1,020,316 to 1,020,957 _0994 Dsui_0995: Dsui_0995 - arabinose efflux permease family protein, at 1,020,976 to 1,022,196 _0995 Position (kb) 1020 1021Strain fitness (log2 ratio) -2 -1 0 1 2at 1019.433 kb on + strand, within Dsui_0992at 1019.488 kb on - strandat 1019.701 kb on + strandat 1019.709 kb on - strandat 1019.709 kb on - strandat 1019.709 kb on - strandat 1019.709 kb on - strandat 1020.458 kb on - strand, within Dsui_0994at 1020.463 kb on - strandat 1020.500 kb on - strand, within Dsui_0994at 1020.514 kb on + strand, within Dsui_0994at 1020.730 kb on + strand, within Dsui_0994at 1020.747 kb on - strand, within Dsui_0994at 1020.951 kb on + strandat 1020.976 kb on - strandat 1021.067 kb on - strandat 1021.244 kb on - strand, within Dsui_0995at 1021.389 kb on + strand, within Dsui_0995at 1021.476 kb on - strand, within Dsui_0995at 1021.640 kb on + strand, within Dsui_0995at 1021.648 kb on - strand, within Dsui_0995at 1021.648 kb on - strandat 1021.696 kb on - strandat 1021.811 kb on - strand, within Dsui_0995

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,019,433 + Dsui_0992 0.52 -1.8
1,019,488 - +2.2
1,019,701 + -0.3
1,019,709 - +0.7
1,019,709 - -1.1
1,019,709 - +0.9
1,019,709 - -1.1
1,020,458 - Dsui_0994 0.22 +0.3
1,020,463 - -0.6
1,020,500 - Dsui_0994 0.29 -0.7
1,020,514 + Dsui_0994 0.31 -1.8
1,020,730 + Dsui_0994 0.64 +0.1
1,020,747 - Dsui_0994 0.67 -0.7
1,020,951 + -0.5
1,020,976 - -1.0
1,021,067 - +0.9
1,021,244 - Dsui_0995 0.22 -0.6
1,021,389 + Dsui_0995 0.34 +0.2
1,021,476 - Dsui_0995 0.41 -0.8
1,021,640 + Dsui_0995 0.54 -2.1
1,021,648 - Dsui_0995 0.55 -1.5
1,021,648 - +1.3
1,021,696 - +2.3
1,021,811 - Dsui_0995 0.68 -0.7

Or see this region's nucleotide sequence