Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0840 and Dsui_0841 are separated by 148 nucleotides Dsui_0841 and Dsui_0842 overlap by 1 nucleotides
Dsui_0840: Dsui_0840 - ABC-type branched-chain amino acid transport system, periplasmic component, at 855,039 to 856,208
_0840
Dsui_0841: Dsui_0841 - ABC-type branched-chain amino acid transport systems, ATPase component, at 856,357 to 857,112
_0841
Dsui_0842: Dsui_0842 - ABC-type branched-chain amino acid transport systems, ATPase component, at 857,112 to 858,893
_0842
Position (kb) 856
857
858 Strain fitness (log2 ratio) -2
-1
0
1
2 at 855.473 kb on - strand at 855.503 kb on + strand, within Dsui_0840 at 855.514 kb on + strand, within Dsui_0840 at 855.514 kb on + strand, within Dsui_0840 at 855.542 kb on - strand, within Dsui_0840 at 855.696 kb on - strand, within Dsui_0840 at 855.729 kb on + strand, within Dsui_0840 at 855.737 kb on - strand, within Dsui_0840 at 855.758 kb on + strand, within Dsui_0840 at 855.768 kb on + strand, within Dsui_0840 at 855.776 kb on - strand, within Dsui_0840 at 855.909 kb on + strand, within Dsui_0840 at 855.919 kb on + strand, within Dsui_0840 at 855.985 kb on - strand, within Dsui_0840 at 856.009 kb on + strand, within Dsui_0840 at 856.014 kb on + strand, within Dsui_0840 at 856.045 kb on + strand, within Dsui_0840 at 856.045 kb on - strand, within Dsui_0840 at 856.055 kb on + strand at 856.095 kb on - strand at 856.105 kb on + strand at 856.105 kb on + strand at 856.105 kb on + strand at 856.105 kb on + strand at 856.113 kb on + strand at 856.113 kb on - strand at 856.113 kb on - strand at 856.120 kb on + strand at 856.129 kb on - strand at 856.169 kb on + strand at 856.172 kb on - strand at 856.394 kb on - strand at 856.419 kb on + strand at 856.601 kb on - strand, within Dsui_0841 at 856.723 kb on + strand at 856.734 kb on + strand, within Dsui_0841 at 856.750 kb on - strand, within Dsui_0841 at 856.776 kb on + strand, within Dsui_0841 at 856.819 kb on + strand, within Dsui_0841 at 856.857 kb on - strand, within Dsui_0841 at 856.859 kb on + strand, within Dsui_0841 at 856.863 kb on - strand, within Dsui_0841 at 856.882 kb on + strand, within Dsui_0841 at 856.952 kb on - strand, within Dsui_0841 at 856.962 kb on - strand, within Dsui_0841 at 857.022 kb on + strand, within Dsui_0841 at 857.030 kb on - strand, within Dsui_0841 at 857.030 kb on - strand, within Dsui_0841 at 857.095 kb on - strand at 857.118 kb on - strand at 857.130 kb on - strand at 857.130 kb on - strand at 857.164 kb on + strand at 857.207 kb on + strand at 857.577 kb on + strand, within Dsui_0842 at 857.583 kb on - strand, within Dsui_0842 at 857.733 kb on - strand, within Dsui_0842 at 857.735 kb on - strand, within Dsui_0842 at 857.758 kb on + strand, within Dsui_0842 at 857.993 kb on - strand, within Dsui_0842 at 858.084 kb on - strand, within Dsui_0842
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 855,473 - +1.3 855,503 + Dsui_0840 0.40 -0.5 855,514 + Dsui_0840 0.41 -1.3 855,514 + Dsui_0840 0.41 -1.8 855,542 - Dsui_0840 0.43 +0.3 855,696 - Dsui_0840 0.56 -0.3 855,729 + Dsui_0840 0.59 -0.5 855,737 - Dsui_0840 0.60 -0.4 855,758 + Dsui_0840 0.61 +0.7 855,768 + Dsui_0840 0.62 +0.0 855,776 - Dsui_0840 0.63 -0.6 855,909 + Dsui_0840 0.74 +0.7 855,919 + Dsui_0840 0.75 -1.7 855,985 - Dsui_0840 0.81 -1.4 856,009 + Dsui_0840 0.83 -0.7 856,014 + Dsui_0840 0.83 -0.4 856,045 + Dsui_0840 0.86 -0.2 856,045 - Dsui_0840 0.86 -0.4 856,055 + +1.3 856,095 - -0.1 856,105 + -0.3 856,105 + +0.1 856,105 + +1.6 856,105 + -0.9 856,113 + +0.4 856,113 - -0.1 856,113 - -1.2 856,120 + +0.1 856,129 - -1.3 856,169 + +0.7 856,172 - +0.3 856,394 - -0.5 856,419 + +1.0 856,601 - Dsui_0841 0.32 -1.0 856,723 + +0.3 856,734 + Dsui_0841 0.50 -0.9 856,750 - Dsui_0841 0.52 -0.6 856,776 + Dsui_0841 0.55 -0.2 856,819 + Dsui_0841 0.61 -0.2 856,857 - Dsui_0841 0.66 -0.3 856,859 + Dsui_0841 0.66 -0.4 856,863 - Dsui_0841 0.67 -0.5 856,882 + Dsui_0841 0.69 +0.5 856,952 - Dsui_0841 0.79 -0.3 856,962 - Dsui_0841 0.80 -0.9 857,022 + Dsui_0841 0.88 -0.1 857,030 - Dsui_0841 0.89 -1.1 857,030 - Dsui_0841 0.89 -0.4 857,095 - -0.1 857,118 - -0.1 857,130 - -0.5 857,130 - -0.2 857,164 + -0.2 857,207 + +0.4 857,577 + Dsui_0842 0.26 +0.4 857,583 - Dsui_0842 0.26 +0.1 857,733 - Dsui_0842 0.35 +0.4 857,735 - Dsui_0842 0.35 +2.3 857,758 + Dsui_0842 0.36 -1.2 857,993 - Dsui_0842 0.49 -0.8 858,084 - Dsui_0842 0.55 -0.2
Or see this region's nucleotide sequence