Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0749 and Dsui_0750 are separated by 23 nucleotides Dsui_0750 and Dsui_0751 are separated by 1 nucleotides
Dsui_0749: Dsui_0749 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 747,299 to 750,160
_0749
Dsui_0750: Dsui_0750 - hypothetical protein, at 750,184 to 750,516
_0750
Dsui_0751: Dsui_0751 - Eco57I restriction endonuclease, at 750,518 to 751,729
_0751
Position (kb) 750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.188 kb on + strand, within Dsui_0749 at 749.189 kb on + strand, within Dsui_0749 at 749.226 kb on + strand, within Dsui_0749 at 749.229 kb on - strand, within Dsui_0749 at 749.262 kb on + strand, within Dsui_0749 at 749.297 kb on + strand, within Dsui_0749 at 749.302 kb on + strand, within Dsui_0749 at 749.403 kb on + strand, within Dsui_0749 at 749.422 kb on - strand, within Dsui_0749 at 749.469 kb on - strand, within Dsui_0749 at 749.512 kb on + strand, within Dsui_0749 at 749.576 kb on + strand, within Dsui_0749 at 749.623 kb on - strand, within Dsui_0749 at 749.635 kb on - strand, within Dsui_0749 at 749.640 kb on - strand at 749.670 kb on + strand, within Dsui_0749 at 749.677 kb on + strand, within Dsui_0749 at 749.685 kb on - strand, within Dsui_0749 at 749.885 kb on + strand at 749.909 kb on + strand at 749.922 kb on - strand at 749.998 kb on - strand at 750.102 kb on - strand at 750.143 kb on - strand at 750.203 kb on + strand at 750.290 kb on - strand, within Dsui_0750 at 750.373 kb on + strand, within Dsui_0750 at 750.387 kb on + strand at 750.399 kb on + strand, within Dsui_0750 at 750.399 kb on + strand, within Dsui_0750 at 750.407 kb on - strand, within Dsui_0750 at 750.419 kb on - strand, within Dsui_0750 at 750.425 kb on - strand, within Dsui_0750 at 750.560 kb on + strand at 750.577 kb on - strand at 750.620 kb on + strand at 750.706 kb on - strand, within Dsui_0751 at 750.797 kb on - strand, within Dsui_0751 at 750.840 kb on - strand, within Dsui_0751 at 750.947 kb on + strand at 750.965 kb on + strand, within Dsui_0751 at 750.980 kb on - strand, within Dsui_0751 at 751.044 kb on + strand, within Dsui_0751 at 751.051 kb on + strand, within Dsui_0751 at 751.052 kb on - strand, within Dsui_0751 at 751.059 kb on - strand, within Dsui_0751 at 751.106 kb on - strand, within Dsui_0751 at 751.170 kb on - strand, within Dsui_0751 at 751.184 kb on - strand, within Dsui_0751 at 751.188 kb on + strand, within Dsui_0751 at 751.191 kb on - strand, within Dsui_0751 at 751.193 kb on + strand, within Dsui_0751 at 751.317 kb on - strand, within Dsui_0751 at 751.398 kb on - strand, within Dsui_0751 at 751.458 kb on + strand, within Dsui_0751 at 751.458 kb on + strand, within Dsui_0751 at 751.466 kb on - strand, within Dsui_0751 at 751.466 kb on - strand, within Dsui_0751 at 751.466 kb on - strand, within Dsui_0751 at 751.509 kb on - strand, within Dsui_0751 at 751.514 kb on - strand, within Dsui_0751
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 749,188 + Dsui_0749 0.66 +0.5 749,189 + Dsui_0749 0.66 +0.9 749,226 + Dsui_0749 0.67 +0.2 749,229 - Dsui_0749 0.67 -1.5 749,262 + Dsui_0749 0.69 +0.4 749,297 + Dsui_0749 0.70 +0.8 749,302 + Dsui_0749 0.70 -0.4 749,403 + Dsui_0749 0.74 +1.5 749,422 - Dsui_0749 0.74 -1.1 749,469 - Dsui_0749 0.76 -0.1 749,512 + Dsui_0749 0.77 +0.3 749,576 + Dsui_0749 0.80 -1.5 749,623 - Dsui_0749 0.81 -0.2 749,635 - Dsui_0749 0.82 +0.6 749,640 - -0.3 749,670 + Dsui_0749 0.83 +0.2 749,677 + Dsui_0749 0.83 -0.6 749,685 - Dsui_0749 0.83 +0.0 749,885 + -0.9 749,909 + +0.5 749,922 - -0.2 749,998 - +1.3 750,102 - -0.5 750,143 - +0.8 750,203 + -1.2 750,290 - Dsui_0750 0.32 -0.3 750,373 + Dsui_0750 0.57 -1.6 750,387 + +0.9 750,399 + Dsui_0750 0.65 +2.7 750,399 + Dsui_0750 0.65 +0.2 750,407 - Dsui_0750 0.67 -0.3 750,419 - Dsui_0750 0.71 -0.7 750,425 - Dsui_0750 0.72 -0.2 750,560 + -1.2 750,577 - +1.2 750,620 + -0.3 750,706 - Dsui_0751 0.16 +2.2 750,797 - Dsui_0751 0.23 +0.7 750,840 - Dsui_0751 0.27 -0.3 750,947 + +0.7 750,965 + Dsui_0751 0.37 -1.9 750,980 - Dsui_0751 0.38 +0.5 751,044 + Dsui_0751 0.43 -1.4 751,051 + Dsui_0751 0.44 +0.1 751,052 - Dsui_0751 0.44 -1.8 751,059 - Dsui_0751 0.45 +1.7 751,106 - Dsui_0751 0.49 +0.5 751,170 - Dsui_0751 0.54 -0.6 751,184 - Dsui_0751 0.55 -1.2 751,188 + Dsui_0751 0.55 -0.1 751,191 - Dsui_0751 0.56 -0.4 751,193 + Dsui_0751 0.56 -0.8 751,317 - Dsui_0751 0.66 -1.1 751,398 - Dsui_0751 0.73 -0.7 751,458 + Dsui_0751 0.78 -1.3 751,458 + Dsui_0751 0.78 -1.5 751,466 - Dsui_0751 0.78 -0.2 751,466 - Dsui_0751 0.78 +0.0 751,466 - Dsui_0751 0.78 +0.1 751,509 - Dsui_0751 0.82 -0.7 751,514 - Dsui_0751 0.82 -2.8
Or see this region's nucleotide sequence