Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0591 and Dsui_0592 are separated by 155 nucleotides Dsui_0592 and Dsui_0593 are separated by 48 nucleotides Dsui_0593 and Dsui_0594 overlap by 8 nucleotides
Dsui_0591: Dsui_0591 - deoxyribodipyrimidine photolyase, at 588,048 to 589,496
_0591
Dsui_0592: Dsui_0592 - putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon, at 589,652 to 591,292
_0592
Dsui_0593: Dsui_0593 - putative transcriptional regulator, at 591,341 to 591,901
_0593
Dsui_0594: Dsui_0594 - RNAse H-fold protein YqgF, at 591,894 to 592,370
_0594
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 588.675 kb on - strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.794 kb on - strand, within Dsui_0591 at 588.892 kb on + strand at 588.892 kb on + strand at 589.053 kb on + strand at 589.118 kb on + strand, within Dsui_0591 at 589.290 kb on + strand, within Dsui_0591 at 589.516 kb on - strand at 589.530 kb on - strand at 589.565 kb on + strand at 589.565 kb on + strand at 589.588 kb on + strand at 589.629 kb on + strand at 589.629 kb on + strand at 589.637 kb on - strand at 589.637 kb on - strand at 589.692 kb on + strand at 589.700 kb on - strand at 589.700 kb on - strand at 589.751 kb on - strand at 589.751 kb on - strand at 589.815 kb on + strand at 589.888 kb on + strand, within Dsui_0592 at 590.046 kb on + strand, within Dsui_0592 at 590.048 kb on - strand, within Dsui_0592 at 590.060 kb on - strand, within Dsui_0592 at 590.191 kb on - strand, within Dsui_0592 at 590.195 kb on - strand at 590.661 kb on + strand, within Dsui_0592 at 590.669 kb on - strand, within Dsui_0592 at 590.845 kb on + strand, within Dsui_0592 at 591.026 kb on + strand, within Dsui_0592 at 591.130 kb on - strand at 591.161 kb on + strand at 591.161 kb on - strand at 591.169 kb on - strand at 591.204 kb on - strand at 591.236 kb on - strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.348 kb on + strand at 591.466 kb on + strand, within Dsui_0593 at 591.586 kb on - strand, within Dsui_0593 at 591.647 kb on + strand, within Dsui_0593 at 591.721 kb on + strand, within Dsui_0593 at 591.724 kb on - strand, within Dsui_0593 at 591.895 kb on + strand at 591.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 588,675 - Dsui_0591 0.43 -0.5 588,764 + Dsui_0591 0.49 +1.3 588,764 + Dsui_0591 0.49 +0.6 588,764 + Dsui_0591 0.49 +1.2 588,794 - Dsui_0591 0.51 +0.2 588,892 + -0.0 588,892 + +0.7 589,053 + +0.3 589,118 + Dsui_0591 0.74 +1.3 589,290 + Dsui_0591 0.86 +1.1 589,516 - +0.0 589,530 - +0.5 589,565 + -0.3 589,565 + -0.3 589,588 + +0.5 589,629 + -0.3 589,629 + +1.0 589,637 - -0.1 589,637 - +0.1 589,692 + +0.8 589,700 - +0.5 589,700 - +0.7 589,751 - +0.2 589,751 - -0.5 589,815 + -0.2 589,888 + Dsui_0592 0.14 -0.2 590,046 + Dsui_0592 0.24 -0.5 590,048 - Dsui_0592 0.24 +0.6 590,060 - Dsui_0592 0.25 +0.0 590,191 - Dsui_0592 0.33 +0.1 590,195 - +0.7 590,661 + Dsui_0592 0.61 +0.3 590,669 - Dsui_0592 0.62 -0.7 590,845 + Dsui_0592 0.73 -0.4 591,026 + Dsui_0592 0.84 +0.7 591,130 - +0.6 591,161 + -0.5 591,161 - +0.2 591,169 - -1.8 591,204 - -1.6 591,236 - +0.1 591,338 + -0.2 591,338 + +0.5 591,338 + -0.1 591,338 + -0.6 591,338 + +0.4 591,338 + -0.1 591,346 - +0.7 591,346 - +0.7 591,346 - -0.5 591,346 - +0.8 591,346 - -0.2 591,346 - -0.3 591,346 - +1.2 591,346 - -0.2 591,346 - +0.5 591,348 + +1.3 591,466 + Dsui_0593 0.22 +0.4 591,586 - Dsui_0593 0.44 +0.5 591,647 + Dsui_0593 0.55 -0.3 591,721 + Dsui_0593 0.68 -0.6 591,724 - Dsui_0593 0.68 +1.0 591,895 + +0.5 591,896 + -0.8
Or see this region's nucleotide sequence