Strain Fitness in Dechlorosoma suillum PS around Dsui_0468

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0467 and Dsui_0468 are separated by 39 nucleotidesDsui_0468 and Dsui_0469 overlap by 4 nucleotides Dsui_0467: Dsui_0467 - lipid A export permease/ATP-binding protein MsbA, at 473,532 to 475,286 _0467 Dsui_0468: Dsui_0468 - glycosyltransferase, at 475,326 to 476,465 _0468 Dsui_0469: Dsui_0469 - lipopolysaccharide heptosyltransferase III, putative, at 476,462 to 477,565 _0469 Position (kb) 475 476 477Strain fitness (log2 ratio) -2 -1 0 1 2at 475.590 kb on - strand, within Dsui_0468at 477.003 kb on + strandat 477.052 kb on - strand, within Dsui_0469at 477.113 kb on - strand, within Dsui_0469at 477.165 kb on - strand, within Dsui_0469at 477.463 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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475,590 - Dsui_0468 0.23 +2.3
477,003 + +1.3
477,052 - Dsui_0469 0.53 +0.0
477,113 - Dsui_0469 0.59 -0.5
477,165 - Dsui_0469 0.64 -2.7
477,463 - -1.8

Or see this region's nucleotide sequence