Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0446 and Dsui_0447 are separated by 7 nucleotides Dsui_0447 and Dsui_0448 are separated by 18 nucleotides Dsui_0448 and Dsui_0449 are separated by 49 nucleotides Dsui_0449 and Dsui_0450 are separated by 72 nucleotides
Dsui_0446: Dsui_0446 - exoribonuclease R, at 452,675 to 454,588
_0446
Dsui_0447: Dsui_0447 - putative esterase, at 454,596 to 455,159
_0447
Dsui_0448: Dsui_0448 - hypothetical protein, at 455,178 to 456,083
_0448
Dsui_0449: Dsui_0449 - undecaprenyl-diphosphatase UppP, at 456,133 to 456,957
_0449
Dsui_0450: Dsui_0450 - MAF protein, at 457,030 to 457,650
_0450
Position (kb) 455
456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.685 kb on + strand, within Dsui_0447 at 454.695 kb on - strand, within Dsui_0447 at 454.698 kb on + strand, within Dsui_0447 at 454.725 kb on - strand, within Dsui_0447 at 454.778 kb on + strand at 454.894 kb on + strand, within Dsui_0447 at 454.963 kb on + strand, within Dsui_0447 at 454.974 kb on + strand, within Dsui_0447 at 454.974 kb on + strand, within Dsui_0447 at 455.008 kb on + strand, within Dsui_0447 at 455.045 kb on - strand, within Dsui_0447 at 455.088 kb on - strand, within Dsui_0447 at 455.161 kb on + strand at 455.161 kb on + strand at 455.169 kb on - strand at 455.283 kb on - strand, within Dsui_0448 at 455.432 kb on + strand at 455.528 kb on - strand, within Dsui_0448 at 455.620 kb on + strand, within Dsui_0448 at 455.628 kb on - strand, within Dsui_0448 at 455.628 kb on - strand, within Dsui_0448 at 455.644 kb on + strand, within Dsui_0448 at 455.747 kb on - strand, within Dsui_0448 at 455.776 kb on - strand, within Dsui_0448 at 455.905 kb on + strand, within Dsui_0448 at 455.906 kb on - strand, within Dsui_0448 at 455.918 kb on - strand, within Dsui_0448 at 455.973 kb on - strand, within Dsui_0448 at 455.973 kb on - strand, within Dsui_0448 at 456.168 kb on - strand at 457.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 454,685 + Dsui_0447 0.16 -0.2 454,695 - Dsui_0447 0.18 -0.1 454,698 + Dsui_0447 0.18 +0.4 454,725 - Dsui_0447 0.23 -0.6 454,778 + +0.8 454,894 + Dsui_0447 0.53 -0.8 454,963 + Dsui_0447 0.65 +0.4 454,974 + Dsui_0447 0.67 +0.0 454,974 + Dsui_0447 0.67 +0.6 455,008 + Dsui_0447 0.73 +0.3 455,045 - Dsui_0447 0.80 -0.6 455,088 - Dsui_0447 0.87 +0.1 455,161 + +0.8 455,161 + +1.5 455,169 - -0.9 455,283 - Dsui_0448 0.12 -0.7 455,432 + +2.3 455,528 - Dsui_0448 0.39 +0.8 455,620 + Dsui_0448 0.49 -1.4 455,628 - Dsui_0448 0.50 +1.0 455,628 - Dsui_0448 0.50 -1.8 455,644 + Dsui_0448 0.51 -1.2 455,747 - Dsui_0448 0.63 -1.1 455,776 - Dsui_0448 0.66 -0.1 455,905 + Dsui_0448 0.80 +0.3 455,906 - Dsui_0448 0.80 -0.1 455,918 - Dsui_0448 0.82 -0.8 455,973 - Dsui_0448 0.88 +0.8 455,973 - Dsui_0448 0.88 +0.0 456,168 - +0.2 457,057 - +0.2
Or see this region's nucleotide sequence