Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0427 and Dsui_0428 are separated by 145 nucleotides Dsui_0428 and Dsui_0429 are separated by 286 nucleotides
Dsui_0427: Dsui_0427 - NADH:flavin oxidoreductase, at 431,424 to 432,527
_0427
Dsui_0428: Dsui_0428 - methyl-accepting chemotaxis protein, at 432,673 to 434,526
_0428
Dsui_0429: Dsui_0429 - cystathionine beta-lyase/cystathionine gamma-synthase, at 434,813 to 435,961
_0429
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 431.699 kb on + strand, within Dsui_0427 at 431.706 kb on + strand, within Dsui_0427 at 431.833 kb on + strand, within Dsui_0427 at 431.892 kb on + strand, within Dsui_0427 at 431.966 kb on + strand, within Dsui_0427 at 432.033 kb on - strand at 432.128 kb on + strand, within Dsui_0427 at 432.321 kb on - strand, within Dsui_0427 at 432.355 kb on - strand, within Dsui_0427 at 432.424 kb on - strand at 432.473 kb on + strand at 432.613 kb on + strand at 432.679 kb on - strand at 432.836 kb on + strand at 432.872 kb on - strand, within Dsui_0428 at 432.991 kb on - strand, within Dsui_0428 at 433.119 kb on + strand, within Dsui_0428 at 433.242 kb on - strand, within Dsui_0428 at 433.277 kb on + strand at 433.287 kb on + strand at 433.306 kb on - strand, within Dsui_0428 at 433.361 kb on + strand at 433.556 kb on - strand, within Dsui_0428 at 433.560 kb on - strand, within Dsui_0428 at 433.610 kb on + strand, within Dsui_0428 at 433.686 kb on - strand, within Dsui_0428 at 433.708 kb on + strand, within Dsui_0428 at 433.831 kb on - strand, within Dsui_0428 at 433.910 kb on + strand, within Dsui_0428 at 434.036 kb on - strand, within Dsui_0428 at 434.037 kb on - strand, within Dsui_0428 at 434.096 kb on + strand, within Dsui_0428 at 434.125 kb on + strand, within Dsui_0428 at 434.125 kb on + strand, within Dsui_0428 at 434.202 kb on + strand, within Dsui_0428 at 434.310 kb on + strand at 434.329 kb on - strand, within Dsui_0428 at 434.381 kb on - strand at 434.686 kb on + strand at 434.823 kb on + strand at 434.823 kb on + strand at 435.011 kb on - strand, within Dsui_0429 at 435.388 kb on + strand at 435.409 kb on - strand, within Dsui_0429 at 435.409 kb on - strand at 435.524 kb on + strand, within Dsui_0429
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 431,699 + Dsui_0427 0.25 -0.2 431,706 + Dsui_0427 0.26 +1.1 431,833 + Dsui_0427 0.37 -1.0 431,892 + Dsui_0427 0.42 +0.1 431,966 + Dsui_0427 0.49 +0.2 432,033 - +2.3 432,128 + Dsui_0427 0.64 +0.7 432,321 - Dsui_0427 0.81 +0.0 432,355 - Dsui_0427 0.84 -0.8 432,424 - +1.3 432,473 + -0.7 432,613 + +2.0 432,679 - -1.4 432,836 + +1.3 432,872 - Dsui_0428 0.11 -0.3 432,991 - Dsui_0428 0.17 -0.1 433,119 + Dsui_0428 0.24 -1.8 433,242 - Dsui_0428 0.31 -1.2 433,277 + +0.3 433,287 + +2.3 433,306 - Dsui_0428 0.34 -0.8 433,361 + +1.3 433,556 - Dsui_0428 0.48 -0.3 433,560 - Dsui_0428 0.48 -0.9 433,610 + Dsui_0428 0.51 -0.4 433,686 - Dsui_0428 0.55 +0.7 433,708 + Dsui_0428 0.56 -0.8 433,831 - Dsui_0428 0.62 -0.9 433,910 + Dsui_0428 0.67 -0.2 434,036 - Dsui_0428 0.74 -0.3 434,037 - Dsui_0428 0.74 -0.3 434,096 + Dsui_0428 0.77 +0.6 434,125 + Dsui_0428 0.78 -0.6 434,125 + Dsui_0428 0.78 -1.0 434,202 + Dsui_0428 0.82 +0.1 434,310 + +0.7 434,329 - Dsui_0428 0.89 -0.7 434,381 - +1.1 434,686 + +0.7 434,823 + +2.9 434,823 + +0.3 435,011 - Dsui_0429 0.17 -1.3 435,388 + +2.3 435,409 - Dsui_0429 0.52 -0.9 435,409 - +1.7 435,524 + Dsui_0429 0.62 -0.5
Or see this region's nucleotide sequence