Strain Fitness in Dechlorosoma suillum PS around Dsui_0119

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0117 and Dsui_0118 are separated by 153 nucleotidesDsui_0118 and Dsui_0119 are separated by 31 nucleotidesDsui_0119 and Dsui_0120 are separated by 1 nucleotides Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610 _0117 Dsui_0118: Dsui_0118 - monothiol glutaredoxin, Grx4 family, at 116,764 to 117,084 _0118 Dsui_0119: Dsui_0119 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 117,116 to 117,961 _0119 Dsui_0120: Dsui_0120 - peptide chain release factor 1, at 117,963 to 119,060 _0120 Position (kb) 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1at 116.125 kb on + strandat 116.127 kb on + strandat 116.137 kb on - strand, within Dsui_0117at 116.146 kb on + strand, within Dsui_0117at 116.207 kb on + strand, within Dsui_0117at 116.256 kb on - strand, within Dsui_0117at 116.281 kb on - strand, within Dsui_0117at 116.290 kb on - strand, within Dsui_0117at 116.329 kb on - strand, within Dsui_0117at 116.331 kb on + strand, within Dsui_0117at 116.339 kb on - strand, within Dsui_0117at 116.379 kb on + strand, within Dsui_0117at 116.379 kb on + strand, within Dsui_0117at 116.379 kb on + strand, within Dsui_0117at 116.387 kb on - strand, within Dsui_0117at 116.387 kb on - strand, within Dsui_0117at 116.509 kb on + strandat 116.509 kb on + strandat 116.592 kb on + strandat 116.592 kb on + strandat 116.759 kb on - strandat 116.759 kb on - strandat 116.762 kb on + strandat 116.762 kb on + strandat 116.769 kb on - strandat 116.775 kb on - strandat 116.870 kb on + strand, within Dsui_0118at 116.922 kb on - strand, within Dsui_0118at 116.939 kb on + strand, within Dsui_0118at 116.957 kb on - strand, within Dsui_0118at 116.970 kb on - strand, within Dsui_0118at 116.974 kb on - strand, within Dsui_0118at 117.036 kb on - strand, within Dsui_0118at 117.069 kb on + strandat 117.094 kb on - strandat 117.931 kb on - strandat 117.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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116,125 + -0.7
116,127 + +0.7
116,137 - Dsui_0117 0.71 -0.1
116,146 + Dsui_0117 0.72 -1.6
116,207 + Dsui_0117 0.75 +0.2
116,256 - Dsui_0117 0.78 -0.6
116,281 - Dsui_0117 0.80 -0.5
116,290 - Dsui_0117 0.80 -0.8
116,329 - Dsui_0117 0.83 +0.6
116,331 + Dsui_0117 0.83 -0.4
116,339 - Dsui_0117 0.83 +0.7
116,379 + Dsui_0117 0.86 -2.8
116,379 + Dsui_0117 0.86 +0.3
116,379 + Dsui_0117 0.86 +0.8
116,387 - Dsui_0117 0.86 -0.2
116,387 - Dsui_0117 0.86 +0.1
116,509 + -1.0
116,509 + -0.6
116,592 + +0.3
116,592 + -0.7
116,759 - -0.1
116,759 - -0.4
116,762 + -1.0
116,762 + -0.5
116,769 - -0.7
116,775 - -0.2
116,870 + Dsui_0118 0.33 -0.2
116,922 - Dsui_0118 0.49 -0.2
116,939 + Dsui_0118 0.55 -0.1
116,957 - Dsui_0118 0.60 -0.4
116,970 - Dsui_0118 0.64 -0.6
116,974 - Dsui_0118 0.65 -0.7
117,036 - Dsui_0118 0.85 +0.4
117,069 + -0.6
117,094 - -0.2
117,931 - -1.6
117,939 + -0.4

Or see this region's nucleotide sequence