Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0096 and Dsui_0097 are separated by 119 nucleotides Dsui_0097 and Dsui_0098 are separated by 88 nucleotides Dsui_0098 and Dsui_0099 are separated by 3 nucleotides Dsui_0099 and Dsui_0100 overlap by 4 nucleotides
Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190
_0096
Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750
_0097
Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033
_0098
Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696
_0099
Dsui_0100: Dsui_0100 - phosphoheptose isomerase, at 98,693 to 99,286
_0100
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.843 kb on + strand, within Dsui_0096 at 96.846 kb on - strand, within Dsui_0096 at 96.846 kb on - strand, within Dsui_0096 at 96.951 kb on - strand, within Dsui_0096 at 97.029 kb on + strand at 97.032 kb on - strand at 97.057 kb on - strand at 97.057 kb on - strand at 97.072 kb on + strand at 97.249 kb on + strand at 97.381 kb on - strand, within Dsui_0097 at 97.442 kb on - strand at 97.444 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.473 kb on + strand, within Dsui_0097 at 97.478 kb on + strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.535 kb on - strand, within Dsui_0097 at 97.540 kb on - strand, within Dsui_0097 at 97.576 kb on - strand, within Dsui_0097 at 97.618 kb on + strand, within Dsui_0097 at 97.626 kb on - strand, within Dsui_0097 at 97.687 kb on - strand at 97.709 kb on - strand at 97.739 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.744 kb on + strand at 97.752 kb on - strand at 98.004 kb on + strand, within Dsui_0098 at 98.066 kb on + strand at 98.066 kb on + strand at 98.098 kb on + strand at 98.106 kb on - strand, within Dsui_0099 at 98.158 kb on - strand, within Dsui_0099 at 98.213 kb on + strand, within Dsui_0099 at 98.243 kb on - strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.407 kb on + strand, within Dsui_0099 at 98.530 kb on - strand, within Dsui_0099 at 98.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 96,843 + Dsui_0096 0.81 -1.7 96,846 - Dsui_0096 0.81 -1.0 96,846 - Dsui_0096 0.81 -0.2 96,951 - Dsui_0096 0.87 +0.3 97,029 + +0.4 97,032 - -0.0 97,057 - -0.1 97,057 - -1.1 97,072 + -0.1 97,249 + +0.3 97,381 - Dsui_0097 0.16 -0.2 97,442 - +0.7 97,444 + Dsui_0097 0.30 -0.2 97,473 + Dsui_0097 0.37 -0.7 97,473 + Dsui_0097 0.37 -0.5 97,478 + Dsui_0097 0.38 -0.9 97,535 - Dsui_0097 0.51 -0.3 97,535 - Dsui_0097 0.51 -0.9 97,535 - Dsui_0097 0.51 -0.8 97,540 - Dsui_0097 0.52 -0.3 97,576 - Dsui_0097 0.60 +0.1 97,618 + Dsui_0097 0.70 +0.5 97,626 - Dsui_0097 0.72 +1.6 97,687 - +0.5 97,709 - -0.2 97,739 + +0.1 97,744 + -0.7 97,744 + +0.1 97,744 + +0.2 97,744 + -0.3 97,752 - -0.7 98,004 + Dsui_0098 0.85 -1.1 98,066 + +1.0 98,066 + +0.1 98,098 + -0.0 98,106 - Dsui_0099 0.10 -0.9 98,158 - Dsui_0099 0.18 -2.1 98,213 + Dsui_0099 0.27 -1.3 98,243 - Dsui_0099 0.31 -3.3 98,407 + Dsui_0099 0.56 -1.0 98,407 + Dsui_0099 0.56 -1.7 98,530 - Dsui_0099 0.75 -1.6 98,710 + -1.0
Or see this region's nucleotide sequence