Strain Fitness in Dechlorosoma suillum PS around Dsui_0053

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0052 and Dsui_0053 are separated by 91 nucleotidesDsui_0053 and Dsui_0054 are separated by 11 nucleotidesDsui_0054 and Dsui_0055 overlap by 4 nucleotides Dsui_0052: Dsui_0052 - pyruvate kinase, at 49,388 to 50,833 _0052 Dsui_0053: Dsui_0053 - hypothetical protein, at 50,925 to 51,629 _0053 Dsui_0054: Dsui_0054 - glycosyl transferase possibly involved in lipopolysaccharide synthesis, at 51,641 to 52,201 _0054 Dsui_0055: Dsui_0055 - glycosyltransferase, at 52,198 to 53,385 _0055 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.931 kb on - strand, within Dsui_0052at 49.964 kb on - strand, within Dsui_0052at 50.000 kb on + strand, within Dsui_0052at 50.027 kb on + strand, within Dsui_0052at 50.089 kb on + strand, within Dsui_0052at 50.101 kb on + strand, within Dsui_0052at 50.269 kb on - strand, within Dsui_0052at 50.293 kb on - strand, within Dsui_0052at 50.293 kb on - strand, within Dsui_0052at 50.383 kb on + strand, within Dsui_0052at 50.508 kb on - strand, within Dsui_0052at 50.534 kb on + strand, within Dsui_0052at 50.542 kb on - strand, within Dsui_0052at 50.685 kb on + strandat 50.685 kb on + strand, within Dsui_0052at 50.685 kb on + strandat 50.685 kb on + strand, within Dsui_0052at 50.685 kb on + strand, within Dsui_0052at 50.685 kb on + strandat 50.693 kb on - strandat 50.787 kb on + strandat 50.991 kb on - strandat 51.071 kb on + strandat 51.135 kb on + strandat 51.159 kb on + strand, within Dsui_0053at 51.495 kb on + strand, within Dsui_0053at 51.541 kb on - strand, within Dsui_0053at 51.580 kb on - strandat 51.580 kb on - strandat 51.583 kb on + strandat 51.591 kb on - strandat 52.211 kb on + strandat 52.399 kb on - strand, within Dsui_0055at 52.578 kb on - strand, within Dsui_0055at 52.583 kb on - strand, within Dsui_0055at 52.607 kb on + strand, within Dsui_0055

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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49,931 - Dsui_0052 0.38 +0.1
49,964 - Dsui_0052 0.40 -0.3
50,000 + Dsui_0052 0.42 -0.9
50,027 + Dsui_0052 0.44 +0.5
50,089 + Dsui_0052 0.48 -1.1
50,101 + Dsui_0052 0.49 -0.7
50,269 - Dsui_0052 0.61 +0.1
50,293 - Dsui_0052 0.63 +0.1
50,293 - Dsui_0052 0.63 -0.1
50,383 + Dsui_0052 0.69 -1.0
50,508 - Dsui_0052 0.77 -0.3
50,534 + Dsui_0052 0.79 +1.3
50,542 - Dsui_0052 0.80 -0.7
50,685 + +0.7
50,685 + Dsui_0052 0.90 -0.7
50,685 + +1.3
50,685 + Dsui_0052 0.90 -0.0
50,685 + Dsui_0052 0.90 -1.1
50,685 + +0.5
50,693 - -0.6
50,787 + +1.3
50,991 - +1.5
51,071 + +0.7
51,135 + +2.3
51,159 + Dsui_0053 0.33 -0.3
51,495 + Dsui_0053 0.81 +0.5
51,541 - Dsui_0053 0.87 -0.0
51,580 - -0.4
51,580 - -0.1
51,583 + +0.7
51,591 - -2.2
52,211 + -0.3
52,399 - Dsui_0055 0.17 +0.1
52,578 - Dsui_0055 0.32 -0.6
52,583 - Dsui_0055 0.32 -0.7
52,607 + Dsui_0055 0.34 +0.5

Or see this region's nucleotide sequence