Strain Fitness in Dechlorosoma suillum PS around Dsui_0052

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0051 and Dsui_0052 are separated by 308 nucleotidesDsui_0052 and Dsui_0053 are separated by 91 nucleotidesDsui_0053 and Dsui_0054 are separated by 11 nucleotides Dsui_0051: Dsui_0051 - cob(II)yrinic acid a,c-diamide reductase, at 48,309 to 49,079 _0051 Dsui_0052: Dsui_0052 - pyruvate kinase, at 49,388 to 50,833 _0052 Dsui_0053: Dsui_0053 - hypothetical protein, at 50,925 to 51,629 _0053 Dsui_0054: Dsui_0054 - glycosyl transferase possibly involved in lipopolysaccharide synthesis, at 51,641 to 52,201 _0054 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.539 kb on + strand, within Dsui_0051at 48.580 kb on - strand, within Dsui_0051at 48.643 kb on + strand, within Dsui_0051at 48.727 kb on - strand, within Dsui_0051at 48.743 kb on + strand, within Dsui_0051at 48.777 kb on - strand, within Dsui_0051at 48.811 kb on - strand, within Dsui_0051at 48.867 kb on - strand, within Dsui_0051at 49.006 kb on + strandat 49.160 kb on + strandat 49.168 kb on - strandat 49.173 kb on - strandat 49.212 kb on + strandat 49.367 kb on - strandat 49.380 kb on + strandat 49.389 kb on - strandat 49.529 kb on + strandat 49.583 kb on - strand, within Dsui_0052at 49.733 kb on - strand, within Dsui_0052at 49.774 kb on + strand, within Dsui_0052at 49.842 kb on + strand, within Dsui_0052at 49.855 kb on - strand, within Dsui_0052at 49.931 kb on - strand, within Dsui_0052at 49.964 kb on - strand, within Dsui_0052at 50.000 kb on + strand, within Dsui_0052at 50.027 kb on + strand, within Dsui_0052at 50.089 kb on + strand, within Dsui_0052at 50.101 kb on + strand, within Dsui_0052at 50.269 kb on - strand, within Dsui_0052at 50.293 kb on - strand, within Dsui_0052at 50.293 kb on - strand, within Dsui_0052at 50.383 kb on + strand, within Dsui_0052at 50.508 kb on - strand, within Dsui_0052at 50.534 kb on + strand, within Dsui_0052at 50.542 kb on - strand, within Dsui_0052at 50.685 kb on + strandat 50.685 kb on + strand, within Dsui_0052at 50.685 kb on + strandat 50.685 kb on + strand, within Dsui_0052at 50.685 kb on + strand, within Dsui_0052at 50.685 kb on + strandat 50.693 kb on - strandat 50.787 kb on + strandat 50.991 kb on - strandat 51.071 kb on + strandat 51.135 kb on + strandat 51.159 kb on + strand, within Dsui_0053at 51.495 kb on + strand, within Dsui_0053at 51.541 kb on - strand, within Dsui_0053at 51.580 kb on - strandat 51.580 kb on - strandat 51.583 kb on + strandat 51.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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48,539 + Dsui_0051 0.30 +0.3
48,580 - Dsui_0051 0.35 -0.3
48,643 + Dsui_0051 0.43 -1.9
48,727 - Dsui_0051 0.54 -0.7
48,743 + Dsui_0051 0.56 +0.1
48,777 - Dsui_0051 0.61 +0.4
48,811 - Dsui_0051 0.65 +0.4
48,867 - Dsui_0051 0.72 +0.1
49,006 + -0.6
49,160 + +0.5
49,168 - +0.2
49,173 - -0.7
49,212 + +0.1
49,367 - +0.4
49,380 + +2.0
49,389 - +1.1
49,529 + -0.7
49,583 - Dsui_0052 0.13 +0.7
49,733 - Dsui_0052 0.24 -0.2
49,774 + Dsui_0052 0.27 +0.5
49,842 + Dsui_0052 0.31 -1.1
49,855 - Dsui_0052 0.32 +0.3
49,931 - Dsui_0052 0.38 +0.1
49,964 - Dsui_0052 0.40 -0.3
50,000 + Dsui_0052 0.42 -0.9
50,027 + Dsui_0052 0.44 +0.5
50,089 + Dsui_0052 0.48 -1.1
50,101 + Dsui_0052 0.49 -0.7
50,269 - Dsui_0052 0.61 +0.1
50,293 - Dsui_0052 0.63 +0.1
50,293 - Dsui_0052 0.63 -0.1
50,383 + Dsui_0052 0.69 -1.0
50,508 - Dsui_0052 0.77 -0.3
50,534 + Dsui_0052 0.79 +1.3
50,542 - Dsui_0052 0.80 -0.7
50,685 + +0.7
50,685 + Dsui_0052 0.90 -0.7
50,685 + +1.3
50,685 + Dsui_0052 0.90 -0.0
50,685 + Dsui_0052 0.90 -1.1
50,685 + +0.5
50,693 - -0.6
50,787 + +1.3
50,991 - +1.5
51,071 + +0.7
51,135 + +2.3
51,159 + Dsui_0053 0.33 -0.3
51,495 + Dsui_0053 0.81 +0.5
51,541 - Dsui_0053 0.87 -0.0
51,580 - -0.4
51,580 - -0.1
51,583 + +0.7
51,591 - -2.2

Or see this region's nucleotide sequence