Strain Fitness in Shewanella amazonensis SB2B around Sama_3118

Experiment: casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos
3,695,820	+		Sama_3116	0.52	+0.3
3,695,820	+		Sama_3116	0.52	-0.0
3,695,821	-		Sama_3116	0.52	-1.1
3,695,870	-		Sama_3116	0.58	-0.8
3,695,870	-		Sama_3116	0.58	-0.3
3,695,870	-		Sama_3116	0.58	-0.6
3,695,883	+		Sama_3116	0.59	+0.9
3,695,883	+		Sama_3116	0.59	-0.7
3,695,889	-		Sama_3116	0.60	-0.9
3,696,006	+		Sama_3116	0.73	+0.2
3,696,006	+		Sama_3116	0.73	+0.1
3,696,006	+		Sama_3116	0.73	-0.3
3,696,006	+		Sama_3116	0.73	+0.7
3,696,006	+		Sama_3116	0.73	-0.1
3,696,007	-		Sama_3116	0.73	+0.2
3,696,007	-		Sama_3116	0.73	+0.7
3,696,007	-		Sama_3116	0.73	-1.1
3,696,007	-		Sama_3116	0.73	-0.0
3,696,007	-		Sama_3116	0.73	-0.5
3,696,030	-		Sama_3116	0.76	-1.3
3,696,065	-		Sama_3116	0.80	+0.4
3,696,120	-		Sama_3116	0.86	+0.7
3,696,136	-		Sama_3116	0.88	+0.9
3,696,141	+		Sama_3116	0.89	-0.8
3,696,141	+		Sama_3116	0.89	-1.9
3,696,142	-		Sama_3116	0.89	+0.7
3,696,142	-		Sama_3116	0.89	-1.2
3,696,166	+				-1.4
3,696,166	+				+0.6
3,696,167	-				-1.2
3,696,176	+				-1.4
3,696,177	-				+0.7
3,696,177	-				+0.3
3,696,214	+				+1.1
3,696,214	+				-0.5
3,696,215	-				+0.2
3,696,236	+				-0.7
3,696,247	+				-0.2
3,696,247	+				+1.1
3,696,247	+				+0.1
3,696,247	+				+0.0
3,696,247	+				-0.4
3,696,247	+				+0.7
3,696,247	+				+0.0
3,696,247	+				+1.2
3,696,247	+				+0.6
3,696,248	-				+0.1
3,696,248	-				+0.3
3,696,248	-				-0.1
3,696,250	+				+0.3
3,696,251	-				+0.2
3,696,370	-		Sama_3117	0.28	-0.0
3,696,418	+		Sama_3117	0.38	-0.7
3,696,418	+		Sama_3117	0.38	+1.3
3,696,418	+		Sama_3117	0.38	+1.9
3,696,419	-		Sama_3117	0.38	-0.5
3,696,419	-		Sama_3117	0.38	-0.3
3,696,419	-		Sama_3117	0.38	-0.9
3,696,428	+		Sama_3117	0.40	-1.6
3,696,428	+		Sama_3117	0.40	-0.4
3,696,428	+		Sama_3117	0.40	-0.9
3,696,429	-		Sama_3117	0.40	-0.6
3,696,481	+		Sama_3117	0.51	+0.6
3,696,482	-		Sama_3117	0.51	-0.9
3,696,498	-		Sama_3117	0.55	+0.4
3,696,537	+		Sama_3117	0.63	-0.9
3,696,538	-		Sama_3117	0.63	-0.1
3,696,538	-		Sama_3117	0.63	+0.3
3,696,659	+		Sama_3117	0.88	-0.4
3,696,690	+				+0.3
3,696,690	+				-0.6
3,696,691	-				-0.1
3,696,691	-				+1.9
3,696,691	-				-1.4
3,696,691	-				+0.4
3,696,691	-				+0.3
3,696,691	-				-0.9
3,696,700	+				+0.3
3,696,700	+				-0.4
3,696,700	+				-0.1
3,696,700	+				+0.9
3,696,701	-				+0.2
3,696,701	-				-0.3
3,696,705	+				+0.9
3,696,706	-				+0.9
3,696,706	-				-0.4
3,696,706	-				-1.0
3,696,706	-				+0.9
3,696,742	+				+0.4
3,696,742	+				-0.2
3,696,743	-				+0.7
3,696,743	-				+0.4
3,696,743	-				+0.7
3,696,743	-				+0.2
3,696,765	+				-0.9
3,696,765	+				-0.7
3,696,765	+				-0.7
3,696,805	-				+0.4
3,696,824	+				+0.6
3,696,885	+		Sama_3118	0.17	+0.7
3,696,917	+		Sama_3118	0.24	+2.2
3,696,917	+		Sama_3118	0.24	-0.8
3,696,917	+		Sama_3118	0.24	-1.4
3,696,917	+		Sama_3118	0.24	-0.5
3,696,918	-		Sama_3118	0.24	+0.9
3,696,970	+		Sama_3118	0.35	-0.3
3,696,970	+		Sama_3118	0.35	-0.3
3,696,971	-		Sama_3118	0.35	-0.9
3,696,971	-		Sama_3118	0.35	+1.2
3,696,971	-		Sama_3118	0.35	-0.4
3,696,974	+		Sama_3118	0.36	+0.2
3,696,974	+		Sama_3118	0.36	-0.1
3,696,975	-		Sama_3118	0.36	-0.1
3,696,975	-		Sama_3118	0.36	-0.4
3,696,975	-		Sama_3118	0.36	-0.0
3,696,975	-		Sama_3118	0.36	+1.1
3,697,001	+		Sama_3118	0.42	-0.1
3,697,001	+		Sama_3118	0.42	+0.1
3,697,001	+		Sama_3118	0.42	+1.1
3,697,001	+		Sama_3118	0.42	-0.7
3,697,001	+		Sama_3118	0.42	+0.3
3,697,001	+		Sama_3118	0.42	+0.1
3,697,002	-		Sama_3118	0.42	+0.1
3,697,002	-		Sama_3118	0.42	-0.1
3,697,002	-		Sama_3118	0.42	-0.7
3,697,002	-		Sama_3118	0.42	-0.1
3,697,002	-		Sama_3118	0.42	+0.4
3,697,002	-		Sama_3118	0.42	+0.5
3,697,002	-		Sama_3118	0.42	+0.3
3,697,002	-		Sama_3118	0.42	-1.4
3,697,002	-		Sama_3118	0.42	-1.6
3,697,063	+		Sama_3118	0.55	+0.3
3,697,064	-		Sama_3118	0.55	-1.1
3,697,064	-		Sama_3118	0.55	-0.1
3,697,064	-		Sama_3118	0.55	+0.0
3,697,064	-		Sama_3118	0.55	+0.9
3,697,069	+		Sama_3118	0.56	-0.4
3,697,069	+		Sama_3118	0.56	-1.1
3,697,070	-		Sama_3118	0.56	-0.9
3,697,070	-		Sama_3118	0.56	-2.7
3,697,084	+		Sama_3118	0.59	+1.0
3,697,090	+		Sama_3118	0.61	+0.1
3,697,091	-		Sama_3118	0.61	-0.6
3,697,141	-		Sama_3118	0.71	+2.5
3,697,141	-		Sama_3118	0.71	-0.9
3,697,147	+		Sama_3118	0.73	+0.5
3,697,157	+		Sama_3118	0.75	-0.1
3,697,157	+		Sama_3118	0.75	-0.0
3,697,157	+		Sama_3118	0.75	-0.4
3,697,158	-		Sama_3118	0.75	-0.3
3,697,158	-		Sama_3118	0.75	+1.1
3,697,158	-		Sama_3118	0.75	+0.6
3,697,158	-		Sama_3118	0.75	-0.4
3,697,201	+		Sama_3118	0.84	+0.5
3,697,202	-		Sama_3118	0.84	+1.5
3,697,202	-		Sama_3118	0.84	+0.3
3,697,215	+		Sama_3118	0.87	+0.0
3,697,215	+		Sama_3118	0.87	+0.6
3,697,216	-		Sama_3118	0.87	+0.5
3,697,233	+				+1.0
3,697,233	+				-2.0
3,697,233	+				+1.5
3,697,233	+				+0.6
3,697,233	+				+0.6
3,697,233	+				+0.4
3,697,233	+				-0.4
3,697,233	+				-0.0
3,697,233	+				-0.0
3,697,233	+				-1.1
3,697,233	+				-0.7
3,697,233	+				-0.4
3,697,233	+				-0.1
3,697,234	-				-0.4
3,697,234	-				+0.5
3,697,234	-				+0.1
3,697,234	-				-0.0
3,697,234	-				+0.2
3,697,234	-				-1.1
3,697,236	+				+0.6
3,697,236	+				-0.9
3,697,236	+				-0.7
3,697,236	+				+1.7
3,697,236	+				+0.1
3,697,236	+				+0.2
3,697,237	-				+1.4
3,697,237	-				-0.0
3,697,237	-				-0.3
3,697,237	-				+0.4
3,697,237	-				+0.5
3,697,237	-				-0.2
3,697,237	-				+0.1
3,697,237	-				+0.0
3,697,247	+				-0.4
3,697,248	-				-0.6
3,697,287	+				-0.3
3,697,287	+				-0.6
3,697,287	+				+0.1
3,697,287	+				+0.2
3,697,287	+				-1.2
3,697,288	-				-0.7
3,697,288	-				-0.2
3,697,289	+				+0.6
3,697,289	+				-0.2
3,697,289	+				+2.9
3,697,289	+				-0.9
3,697,289	+				-0.1
3,697,290	-				+1.5
3,697,290	-				+1.2
3,697,290	-				+0.6
3,697,290	-				-0.9
3,697,304	+				+0.3
3,697,305	-				-0.9
3,697,306	+				-0.4
3,697,306	+				-0.7
3,697,317	+				-1.2
3,697,317	+				+0.1
3,697,362	+				-0.2
3,697,362	+				-0.4
3,697,362	+				+0.1
3,697,362	+				+0.1
3,697,363	-				+0.4
3,697,363	-				+0.5
3,697,363	-				+0.5
3,697,363	-				-0.1
3,697,378	+				+0.1
3,697,378	+				+0.0
3,697,379	-				-0.8
3,697,379	-				+0.1
3,697,454	+				+0.9
3,697,455	-				-0.0
3,697,464	-				-0.7
3,697,464	-				+0.4
3,697,464	-				-0.3
3,697,464	-				+0.1
3,697,464	-				-0.2
3,697,464	-				-0.3
3,697,531	+				+0.2
3,697,543	+				+0.5
3,697,544	-				+0.6
3,697,552	-				-0.7
3,697,552	-				+0.5
3,697,563	+				-1.4
3,697,579	+				+0.2
3,697,579	+				-0.1
3,697,579	+				+1.3
3,697,579	+				-0.4
3,697,580	-				-0.4
3,697,580	-				+0.4
3,697,580	-				-0.3
3,697,582	+				-1.4
3,697,583	-				-0.1
3,697,614	-				+0.6
3,697,632	-				+0.3
3,697,649	-				-0.1
3,697,696	+				+0.0
3,697,697	-				-0.6
3,697,731	-				+0.2
3,697,746	+				+0.6
3,697,761	+				+0.4
3,697,787	+				-0.1
3,697,850	-				-0.0
3,697,887	+				+0.6
3,697,949	-				+0.2
3,698,000	-				-0.3
3,698,000	-				+0.6
3,698,123	+				+0.6
3,698,123	+				+0.2
3,698,123	+				+0.1
3,698,124	-				+0.5
3,698,124	-				+0.1
3,698,163	-				-1.6
3,698,176	-				+0.1
3,698,182	+				-0.9
3,698,183	-				+2.5
3,698,183	-				+1.2
3,698,254	+		Sama_3119	0.10	-0.6
3,698,254	+		Sama_3119	0.10	-0.8
3,698,254	+		Sama_3119	0.10	+0.4
3,698,254	+		Sama_3119	0.10	+0.0
3,698,255	-		Sama_3119	0.10	-0.1