Strain Fitness in Shewanella amazonensis SB2B around Sama_2071

Experiment: casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos
2,505,034	-		Sama_2069	0.48	+0.2
2,505,034	-		Sama_2069	0.48	-0.3
2,505,068	-		Sama_2069	0.56	-0.5
2,505,068	-		Sama_2069	0.56	-0.6
2,505,227	-				+1.1
2,505,227	-				-0.9
2,505,303	+				+0.1
2,505,304	-				-0.0
2,505,304	-				-1.5
2,505,305	+				+0.2
2,505,306	+				+0.5
2,505,307	-				-0.1
2,505,307	-				-0.3
2,505,307	-				+1.1
2,505,309	+				+0.3
2,505,310	-				-0.5
2,505,326	+				-0.7
2,505,326	+				-0.1
2,505,327	-				-0.5
2,505,327	-				+0.7
2,505,327	-				+0.7
2,505,327	-				-0.3
2,505,331	+				-0.3
2,505,380	+				-0.1
2,505,386	+				-0.4
2,505,386	+				-0.2
2,505,387	-				-0.2
2,505,387	-				-0.9
2,505,462	+		Sama_2070	0.23	+0.4
2,505,504	+		Sama_2070	0.32	+0.2
2,505,504	+		Sama_2070	0.32	-0.8
2,505,504	+		Sama_2070	0.32	+0.0
2,505,542	-		Sama_2070	0.40	-0.5
2,505,542	-		Sama_2070	0.40	+0.1
2,505,634	-		Sama_2070	0.59	-0.4
2,505,697	+		Sama_2070	0.72	+0.1
2,505,698	-		Sama_2070	0.72	+1.5
2,505,700	-		Sama_2070	0.72	-0.3
2,505,741	+		Sama_2070	0.81	+0.5
2,505,741	+		Sama_2070	0.81	-1.5
2,505,741	+		Sama_2070	0.81	+0.4
2,505,741	+		Sama_2070	0.81	-0.1
2,505,742	-		Sama_2070	0.81	-2.3
2,505,823	+				+0.2
2,505,824	-				+0.8
2,505,859	+				+0.1
2,505,859	+				-0.4
2,505,859	+				-0.5
2,505,859	+				+0.7
2,505,860	-				-0.9
2,505,860	-				+0.6
2,505,869	-				-0.1
2,505,878	-				+0.3
2,505,892	+				+0.9
2,505,893	-				-0.9
2,505,893	-				-0.9
2,505,903	+				-1.1
2,505,904	-				+0.1
2,505,935	+				-1.7
2,505,935	+				-0.7
2,505,962	-				+0.4
2,505,975	+				+0.3
2,505,976	-				+0.5
2,505,976	-				-0.2
2,505,976	-				-0.2
2,505,980	-				-1.5
2,505,980	-				+0.4
2,505,980	-				-0.1
2,505,980	-				-0.1
2,506,084	+				+0.1
2,506,085	-				+0.5
2,506,091	-				+0.5
2,506,111	+				-2.1
2,506,111	+				-0.4
2,506,111	+				-1.0
2,506,111	+				+1.4
2,506,112	-				+0.3
2,506,112	-				+0.4
2,506,112	-				-0.4
2,506,112	-				-0.2
2,506,112	-				+0.5
2,506,112	-				-1.1
2,506,112	-				+0.1
2,506,112	-				+0.3
2,506,112	-				+0.8
2,506,112	-				+1.8
2,506,112	-				-1.9
2,506,116	+				+0.5
2,506,116	+				-0.5
2,506,117	-				-0.7
2,506,142	-				-0.4
2,506,158	+				-0.0
2,506,158	+				-0.0
2,506,159	-				-0.8
2,506,159	-				-1.1
2,506,159	-				-2.3
2,506,159	-				-0.5
2,506,159	-				-1.0
2,506,198	+				+0.2
2,506,199	-				-0.3
2,506,367	-		Sama_2071	0.13	-0.5
2,506,402	-		Sama_2071	0.14	-0.3
2,506,402	-		Sama_2071	0.14	+0.4
2,506,402	-		Sama_2071	0.14	-1.3
2,506,402	-		Sama_2071	0.14	+1.2
2,506,414	-		Sama_2071	0.15	-0.1
2,506,447	+		Sama_2071	0.16	-0.5
2,506,448	-		Sama_2071	0.16	+1.1
2,506,462	+		Sama_2071	0.16	+0.5
2,506,513	+		Sama_2071	0.18	+1.1
2,506,556	-		Sama_2071	0.19	-0.5
2,506,556	-		Sama_2071	0.19	-0.7
2,506,576	+		Sama_2071	0.20	+0.5
2,506,611	+		Sama_2071	0.21	-0.1
2,506,612	-		Sama_2071	0.21	-0.7
2,506,629	+		Sama_2071	0.22	+0.9
2,506,629	+		Sama_2071	0.22	-0.1
2,506,630	-		Sama_2071	0.22	-0.3
2,506,630	-		Sama_2071	0.22	+0.6
2,506,690	+		Sama_2071	0.24	+0.7
2,506,691	-		Sama_2071	0.24	-0.5
2,506,691	-		Sama_2071	0.24	-0.8
2,506,691	-		Sama_2071	0.24	-0.7
2,506,707	-		Sama_2071	0.24	-0.4
2,506,707	-		Sama_2071	0.24	+0.1
2,506,782	+		Sama_2071	0.27	+0.5
2,506,783	-		Sama_2071	0.27	+1.1
2,506,783	-		Sama_2071	0.27	-1.4
2,506,913	+		Sama_2071	0.31	-1.1
2,506,914	-		Sama_2071	0.31	-0.1
2,506,926	+		Sama_2071	0.31	+0.5
2,506,933	+		Sama_2071	0.32	+0.8
2,506,967	+		Sama_2071	0.33	-0.3
2,506,967	+		Sama_2071	0.33	-0.0
2,506,967	+		Sama_2071	0.33	+0.1
2,506,967	+		Sama_2071	0.33	-1.2
2,506,967	+		Sama_2071	0.33	-0.5
2,506,968	-		Sama_2071	0.33	+0.4
2,506,968	-		Sama_2071	0.33	+0.4
2,507,000	-		Sama_2071	0.34	+0.3
2,507,066	-		Sama_2071	0.36	-0.5
2,507,153	+		Sama_2071	0.39	-0.3
2,507,199	-		Sama_2071	0.41	-0.4
2,507,247	+		Sama_2071	0.42	+0.9
2,507,359	-		Sama_2071	0.46	-0.4
2,507,359	-		Sama_2071	0.46	-0.3
2,507,395	+		Sama_2071	0.47	+1.1
2,507,455	-		Sama_2071	0.49	-0.2
2,507,503	+		Sama_2071	0.51	+0.9
2,507,504	-		Sama_2071	0.51	-0.9
2,507,504	-		Sama_2071	0.51	-0.5
2,507,536	+		Sama_2071	0.52	+0.1
2,507,537	-		Sama_2071	0.52	-0.3
2,507,553	-		Sama_2071	0.52	+0.8
2,507,566	+		Sama_2071	0.53	-0.5
2,507,567	-		Sama_2071	0.53	-1.3
2,507,570	-		Sama_2071	0.53	+0.1
2,507,570	-		Sama_2071	0.53	-0.4
2,507,603	-		Sama_2071	0.54	+0.9
2,507,603	-		Sama_2071	0.54	+1.0
2,507,658	+		Sama_2071	0.56	-0.3
2,507,658	+		Sama_2071	0.56	-0.8
2,507,659	-		Sama_2071	0.56	-0.1
2,507,701	+		Sama_2071	0.57	-1.8
2,507,701	+		Sama_2071	0.57	+0.5
2,507,702	-		Sama_2071	0.57	+1.1
2,507,812	-		Sama_2071	0.61	-0.2
2,507,828	+		Sama_2071	0.61	-1.5
2,507,829	-		Sama_2071	0.61	-1.2
2,507,829	-		Sama_2071	0.61	-0.1
2,507,829	-		Sama_2071	0.61	-0.7
2,507,833	+		Sama_2071	0.61	+0.3
2,507,925	-		Sama_2071	0.65	-0.1
2,507,956	+		Sama_2071	0.66	-0.4
2,507,957	-		Sama_2071	0.66	+0.9
2,507,957	-		Sama_2071	0.66	-0.1
2,507,957	-		Sama_2071	0.66	-0.8
2,507,957	-		Sama_2071	0.66	+0.8
2,507,971	+		Sama_2071	0.66	+0.2
2,507,972	-		Sama_2071	0.66	+1.1
2,508,129	+		Sama_2071	0.71	+0.7
2,508,130	-		Sama_2071	0.71	-0.1
2,508,206	-		Sama_2071	0.74	-0.8
2,508,234	-		Sama_2071	0.75	+0.2
2,508,370	+		Sama_2071	0.79	+2.1
2,508,460	+		Sama_2071	0.82	+0.2
2,508,682	+		Sama_2071	0.90	-0.0
2,508,761	+				+0.5
2,508,832	-				-0.6
2,508,859	-				+0.1
2,508,868	+				-1.1
2,508,868	+				-0.5
2,508,869	-				-0.1
2,508,869	-				+0.7
2,508,884	+				+1.2
2,508,885	-				+1.1
2,508,898	-				+1.1
2,508,905	-				-0.4
2,508,905	-				-0.3
2,508,908	+				-0.2
2,508,909	-				-1.0
2,508,909	-				-0.2
2,508,909	-				+0.5
2,508,954	+				-0.5
2,508,954	+				-2.0
2,508,954	+				-0.5
2,508,955	-				-0.4
2,508,955	-				-0.5
2,508,955	-				-1.4
2,508,956	+				-0.1
2,508,956	+				+1.3
2,508,957	-				+0.7
2,509,032	+				-0.8
2,509,032	+				+1.1
2,509,033	-				-0.4
2,509,034	+				-0.7
2,509,035	-				+1.1
2,509,121	+				-0.1
2,509,122	-				-0.2
2,509,122	-				-1.1
2,509,122	-				-0.2
2,509,125	+				+1.1
2,509,125	+				+0.5
2,509,125	+				-2.3
2,509,126	-				+0.6
2,509,126	-				+1.5
2,509,126	-				-0.4
2,509,126	-				+0.3
2,509,126	-				+1.3
2,509,126	-				-0.3
2,509,126	-				-0.9
2,509,126	-				-0.8
2,509,136	+				-0.5
2,509,147	-				-1.1
2,509,147	-				+0.5
2,509,201	+				-1.4
2,509,211	+				-1.3
2,509,212	-				-1.8
2,509,311	-				-1.5
2,509,319	-				-0.5
2,509,550	+		Sama_2072	0.16	-0.7
2,509,551	-		Sama_2072	0.16	-3.1
2,509,551	-		Sama_2072	0.16	-0.5
2,509,719	-		Sama_2072	0.23	-1.4
2,509,799	-		Sama_2072	0.26	-1.5
2,509,823	+		Sama_2072	0.27	-1.5
2,509,824	-		Sama_2072	0.27	-2.1
2,509,890	+		Sama_2072	0.30	+0.7
2,509,895	-		Sama_2072	0.30	-0.5
2,509,895	-		Sama_2072	0.30	-2.1
2,509,895	-		Sama_2072	0.30	+0.5
2,509,895	-		Sama_2072	0.30	+2.1
2,509,898	-		Sama_2072	0.30	-1.7
2,509,916	-		Sama_2072	0.31	-0.5
2,509,995	-		Sama_2072	0.34	-1.8