Strain Fitness in Shewanella amazonensis SB2B around Sama_1060

Experiment: casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos
1,282,793	+		Sama_1058	0.80	-1.4
1,282,807	+		Sama_1058	0.81	-2.5
1,283,065	+				+1.1
1,283,065	+				-0.0
1,283,066	-				-0.8
1,283,066	-				-0.1
1,283,066	-				+0.6
1,283,077	+				+0.5
1,283,239	+		Sama_1059	0.35	-1.2
1,283,255	+		Sama_1059	0.39	-0.6
1,283,255	+		Sama_1059	0.39	+1.0
1,283,271	+		Sama_1059	0.42	-0.4
1,283,271	+		Sama_1059	0.42	-0.6
1,283,292	+		Sama_1059	0.47	-0.2
1,283,293	-		Sama_1059	0.48	-1.2
1,283,374	+		Sama_1059	0.67	-0.5
1,283,375	-		Sama_1059	0.67	+0.6
1,283,398	-		Sama_1059	0.73	-0.4
1,283,415	+		Sama_1059	0.77	+0.4
1,283,416	-		Sama_1059	0.77	-0.5
1,283,416	-		Sama_1059	0.77	+2.5
1,283,417	+		Sama_1059	0.77	-0.9
1,283,418	-		Sama_1059	0.78	-0.6
1,283,434	-		Sama_1059	0.82	+0.6
1,283,434	-		Sama_1059	0.82	+0.4
1,283,434	-		Sama_1059	0.82	-0.2
1,283,445	-		Sama_1059	0.84	+0.1
1,283,468	+		Sama_1059	0.90	-0.2
1,283,518	-				+0.6
1,283,547	-				+0.2
1,283,568	+				+0.3
1,283,616	+				+0.1
1,283,616	+				-0.8
1,283,620	+				+0.3
1,283,620	+				-0.0
1,283,620	+				-0.5
1,283,620	+				+0.6
1,283,620	+				-2.2
1,283,621	-				+0.0
1,283,621	-				+0.1
1,283,621	-				-1.7
1,283,621	-				+0.1
1,283,621	-				-0.4
1,283,694	+		Sama_1060	0.13	+0.9
1,283,697	+		Sama_1060	0.13	-0.4
1,283,697	+		Sama_1060	0.13	-0.7
1,283,697	+		Sama_1060	0.13	+0.4
1,283,697	+		Sama_1060	0.13	+0.7
1,283,698	-		Sama_1060	0.13	+0.9
1,283,698	-		Sama_1060	0.13	-0.4
1,283,698	-		Sama_1060	0.13	-0.9
1,283,797	+		Sama_1060	0.29	+0.5
1,283,797	+		Sama_1060	0.29	+0.8
1,283,842	+		Sama_1060	0.37	-0.5
1,283,842	+		Sama_1060	0.37	+0.3
1,283,842	+		Sama_1060	0.37	-0.4
1,283,856	+		Sama_1060	0.39	+0.7
1,283,856	+		Sama_1060	0.39	-0.4
1,283,864	+		Sama_1060	0.40	-0.6
1,283,923	+		Sama_1060	0.50	+0.2
1,283,923	+		Sama_1060	0.50	-0.6
1,283,923	+		Sama_1060	0.50	+0.5
1,283,923	+		Sama_1060	0.50	-0.4
1,283,923	+		Sama_1060	0.50	+0.1
1,283,923	+		Sama_1060	0.50	+0.4
1,283,924	-		Sama_1060	0.50	+0.9
1,283,924	-		Sama_1060	0.50	+0.1
1,283,924	-		Sama_1060	0.50	+0.3
1,283,924	-		Sama_1060	0.50	+1.2
1,283,924	-		Sama_1060	0.50	+0.3
1,283,985	+		Sama_1060	0.60	-1.2
1,283,986	-		Sama_1060	0.60	-0.6
1,284,018	+		Sama_1060	0.66	-1.1
1,284,019	-		Sama_1060	0.66	-0.4
1,284,019	-		Sama_1060	0.66	-1.2
1,284,019	-		Sama_1060	0.66	+0.7
1,284,026	+		Sama_1060	0.67	+0.6
1,284,027	-		Sama_1060	0.67	-0.6
1,284,052	+		Sama_1060	0.71	-1.2
1,284,061	+		Sama_1060	0.73	-0.7
1,284,061	+		Sama_1060	0.73	+0.7
1,284,061	+		Sama_1060	0.73	+1.5
1,284,062	-		Sama_1060	0.73	-1.4
1,284,062	-		Sama_1060	0.73	-0.9
1,284,100	-		Sama_1060	0.79	-0.0
1,284,157	+		Sama_1060	0.88	-0.0
1,284,158	-		Sama_1060	0.88	-0.7
1,284,169	+				+0.6
1,284,169	+				-0.9
1,284,180	+				+0.5
1,284,180	+				-0.3
1,284,181	-				-0.7
1,284,281	+				-0.4
1,284,281	+				-0.4
1,284,282	-				+0.3
1,284,282	-				-3.2
1,284,282	-				-0.4
1,284,307	-				+0.3
1,284,307	-				-1.6
1,284,332	-				-0.2
1,284,347	-				-0.6
1,284,361	+				+1.6
1,284,384	-				+0.8
1,284,440	+				+0.1
1,284,442	+				-0.8
1,284,442	+				-0.4
1,284,442	+				-1.4
1,284,442	+				-2.1
1,284,442	+				-0.3
1,284,442	+				+0.2
1,284,442	+				+0.2
1,284,443	-				+0.2
1,284,443	-				-0.1
1,284,443	-				+0.3
1,284,443	-				-0.2
1,284,443	-				-0.2
1,284,456	-				+0.1
1,284,456	-				+1.4
1,284,512	+				-1.5
1,284,513	-				-0.4
1,284,553	+				-0.4
1,284,619	+		Sama_1061	0.11	+1.1
1,284,619	+		Sama_1061	0.11	+0.1
1,284,620	-		Sama_1061	0.11	+0.3
1,284,622	+		Sama_1061	0.11	-0.6
1,284,623	-		Sama_1061	0.11	-0.2
1,284,623	-		Sama_1061	0.11	-0.0
1,284,691	+		Sama_1061	0.14	+1.2
1,284,692	-		Sama_1061	0.14	+1.4
1,284,692	-		Sama_1061	0.14	+0.1
1,284,731	-		Sama_1061	0.16	+0.6
1,284,731	-		Sama_1061	0.16	-0.4
1,284,731	-		Sama_1061	0.16	+0.8
1,284,731	-		Sama_1061	0.16	+0.2
1,284,764	-		Sama_1061	0.17	+0.5
1,284,850	+		Sama_1061	0.21	+0.2
1,284,850	+		Sama_1061	0.21	+0.2
1,284,850	+		Sama_1061	0.21	+0.9
1,284,851	-		Sama_1061	0.21	-0.0
1,284,949	+		Sama_1061	0.25	-0.1
1,284,950	-		Sama_1061	0.25	+2.0
1,284,964	+		Sama_1061	0.26	+0.8
1,284,965	-		Sama_1061	0.26	+0.3
1,285,018	+		Sama_1061	0.28	-0.3
1,285,055	-		Sama_1061	0.30	-0.3
1,285,084	+		Sama_1061	0.31	-0.9
1,285,084	+		Sama_1061	0.31	+3.0
1,285,084	+		Sama_1061	0.31	+0.6
1,285,084	+		Sama_1061	0.31	+1.1
1,285,085	-		Sama_1061	0.31	-0.2
1,285,085	-		Sama_1061	0.31	+3.0
1,285,087	+		Sama_1061	0.31	+0.2
1,285,088	-		Sama_1061	0.31	-0.3
1,285,088	-		Sama_1061	0.31	+0.4
1,285,096	+		Sama_1061	0.32	+0.3
1,285,097	-		Sama_1061	0.32	-0.1
1,285,097	-		Sama_1061	0.32	-0.4
1,285,097	-		Sama_1061	0.32	+1.0
1,285,097	-		Sama_1061	0.32	-0.4
1,285,097	-		Sama_1061	0.32	+1.2
1,285,100	+		Sama_1061	0.32	+0.0
1,285,100	+		Sama_1061	0.32	+1.1
1,285,101	-		Sama_1061	0.32	-0.2
1,285,101	-		Sama_1061	0.32	+1.1
1,285,107	+		Sama_1061	0.32	-0.6
1,285,108	-		Sama_1061	0.32	-0.6
1,285,108	-		Sama_1061	0.32	+0.2
1,285,108	-		Sama_1061	0.32	+0.6
1,285,119	+		Sama_1061	0.33	+0.6
1,285,120	-		Sama_1061	0.33	-1.5
1,285,140	+		Sama_1061	0.34	+1.2
1,285,156	+		Sama_1061	0.34	-1.1
1,285,156	+		Sama_1061	0.34	-0.5
1,285,157	-		Sama_1061	0.34	+0.3
1,285,157	-		Sama_1061	0.34	-1.7
1,285,157	-		Sama_1061	0.34	-1.4
1,285,226	-		Sama_1061	0.37	+0.2