Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0491 and SO0492 are separated by 137 nucleotides SO0492 and SO0493 are separated by 73 nucleotides SO0493 and SO0493.1 are separated by 295 nucleotides
SO0491: SO0491 - peptidase, M13 family (NCBI ptt file), at 514,492 to 516,627
SO0491
SO0492: SO0492 - hypothetical flavoprotein oxygenases (NCBI ptt file), at 516,765 to 517,394
SO0492
SO0493: SO0493 - hypothetical protein (NCBI ptt file), at 517,468 to 517,599
SO0493
SO0493.1: SO0493.1 - hypothetical protein (NCBI ptt file), at 517,895 to 518,122
SO0493.1
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1 at 515.820 kb on + strand, within SO0491 at 515.828 kb on - strand, within SO0491 at 515.844 kb on + strand, within SO0491 at 515.938 kb on + strand, within SO0491 at 515.979 kb on - strand, within SO0491 at 516.510 kb on - strand at 516.527 kb on + strand at 516.542 kb on + strand at 516.542 kb on + strand at 516.555 kb on + strand at 516.591 kb on + strand at 516.628 kb on + strand at 516.636 kb on - strand at 516.636 kb on - strand at 516.636 kb on - strand at 516.636 kb on - strand at 516.636 kb on - strand at 516.636 kb on - strand at 516.716 kb on - strand at 516.812 kb on - strand at 516.950 kb on - strand, within SO0492 at 516.986 kb on - strand, within SO0492 at 517.124 kb on + strand, within SO0492 at 517.129 kb on + strand, within SO0492 at 517.150 kb on - strand, within SO0492 at 517.199 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.230 kb on + strand, within SO0492 at 517.238 kb on - strand, within SO0492 at 517.238 kb on - strand, within SO0492 at 517.388 kb on + strand at 517.388 kb on + strand at 517.389 kb on - strand at 517.396 kb on - strand at 517.396 kb on - strand at 517.396 kb on - strand at 517.412 kb on + strand at 517.415 kb on - strand at 517.421 kb on + strand at 517.436 kb on + strand at 517.444 kb on - strand at 517.460 kb on - strand at 517.594 kb on + strand at 517.627 kb on + strand at 517.627 kb on + strand at 517.627 kb on + strand at 517.630 kb on - strand at 517.635 kb on - strand at 517.716 kb on - strand at 517.717 kb on + strand at 517.725 kb on - strand at 517.802 kb on + strand at 517.830 kb on - strand at 517.842 kb on + strand at 517.843 kb on - strand at 517.850 kb on + strand at 517.869 kb on - strand at 517.947 kb on + strand, within SO0493.1 at 517.947 kb on + strand, within SO0493.1 at 517.948 kb on + strand, within SO0493.1 at 517.955 kb on - strand, within SO0493.1 at 517.957 kb on + strand, within SO0493.1 at 517.957 kb on + strand, within SO0493.1 at 517.969 kb on - strand, within SO0493.1 at 517.990 kb on + strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 517.998 kb on - strand, within SO0493.1 at 518.006 kb on - strand, within SO0493.1 at 518.007 kb on + strand, within SO0493.1 at 518.007 kb on + strand, within SO0493.1 at 518.008 kb on + strand, within SO0493.1 at 518.024 kb on - strand, within SO0493.1 at 518.025 kb on + strand, within SO0493.1 at 518.025 kb on + strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.033 kb on - strand, within SO0493.1 at 518.042 kb on - strand, within SO0493.1 at 518.042 kb on - strand, within SO0493.1 at 518.049 kb on + strand, within SO0493.1 at 518.049 kb on + strand, within SO0493.1 at 518.052 kb on - strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.076 kb on + strand, within SO0493.1 at 518.081 kb on + strand, within SO0493.1 at 518.081 kb on + strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.084 kb on - strand, within SO0493.1 at 518.089 kb on - strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.091 kb on + strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.099 kb on - strand, within SO0493.1 at 518.104 kb on - strand at 518.104 kb on - strand at 518.105 kb on - strand at 518.105 kb on - strand at 518.112 kb on - strand at 518.120 kb on + strand at 518.138 kb on - strand at 518.146 kb on - strand at 518.159 kb on + strand at 518.159 kb on + strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.167 kb on - strand at 518.172 kb on - strand at 518.198 kb on + strand at 518.208 kb on - strand at 518.216 kb on - strand at 518.269 kb on - strand at 518.296 kb on + strand at 518.300 kb on - strand at 518.304 kb on - strand at 518.326 kb on + strand at 518.336 kb on + strand at 518.339 kb on - strand at 518.344 kb on - strand at 518.344 kb on - strand at 518.357 kb on + strand at 518.362 kb on + strand at 518.362 kb on + strand at 518.365 kb on + strand at 518.365 kb on - strand at 518.370 kb on - strand at 518.370 kb on - strand at 518.370 kb on - strand at 518.373 kb on - strand at 518.374 kb on + strand at 518.374 kb on + strand at 518.375 kb on - strand at 518.375 kb on - strand at 518.382 kb on - strand at 518.382 kb on - strand at 518.382 kb on - strand at 518.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 515,820 + SO0491 0.62 +0.3 515,828 - SO0491 0.63 -0.8 515,844 + SO0491 0.63 +0.0 515,938 + SO0491 0.68 +0.6 515,979 - SO0491 0.70 -0.6 516,510 - +0.5 516,527 + +0.1 516,542 + +0.3 516,542 + +0.3 516,555 + -0.3 516,591 + +0.2 516,628 + +0.4 516,636 - +0.4 516,636 - +0.3 516,636 - +0.4 516,636 - +0.2 516,636 - +0.1 516,636 - +0.1 516,716 - -0.1 516,812 - -0.0 516,950 - SO0492 0.29 +0.0 516,986 - SO0492 0.35 -0.0 517,124 + SO0492 0.57 +0.0 517,129 + SO0492 0.58 -0.5 517,150 - SO0492 0.61 +0.0 517,199 + SO0492 0.69 -0.7 517,230 + SO0492 0.74 -0.2 517,230 + SO0492 0.74 +0.7 517,230 + SO0492 0.74 -0.7 517,230 + SO0492 0.74 -0.0 517,238 - SO0492 0.75 -0.9 517,238 - SO0492 0.75 +0.0 517,388 + -2.0 517,388 + -0.2 517,389 - -1.2 517,396 - -0.2 517,396 - +0.2 517,396 - -0.7 517,412 + +0.3 517,415 - -0.4 517,421 + +0.2 517,436 + -0.1 517,444 - -0.3 517,460 - -0.5 517,594 + +0.8 517,627 + -0.1 517,627 + -0.6 517,627 + -0.1 517,630 - +0.1 517,635 - -0.4 517,716 - +1.2 517,717 + +0.5 517,725 - +1.1 517,802 + +1.0 517,830 - -0.3 517,842 + +0.1 517,843 - -0.0 517,850 + -0.4 517,869 - -0.3 517,947 + SO0493.1 0.23 +0.7 517,947 + SO0493.1 0.23 +0.4 517,948 + SO0493.1 0.23 +0.1 517,955 - SO0493.1 0.26 +0.2 517,957 + SO0493.1 0.27 -1.6 517,957 + SO0493.1 0.27 -0.3 517,969 - SO0493.1 0.32 -0.6 517,990 + SO0493.1 0.42 +0.0 517,998 - SO0493.1 0.45 +0.3 517,998 - SO0493.1 0.45 +0.2 517,998 - SO0493.1 0.45 +0.3 517,998 - SO0493.1 0.45 +1.7 518,006 - SO0493.1 0.49 +0.5 518,007 + SO0493.1 0.49 +0.1 518,007 + SO0493.1 0.49 +0.6 518,008 + SO0493.1 0.50 +0.2 518,024 - SO0493.1 0.57 +1.3 518,025 + SO0493.1 0.57 +1.1 518,025 + SO0493.1 0.57 +0.1 518,033 - SO0493.1 0.61 +0.3 518,033 - SO0493.1 0.61 +0.4 518,033 - SO0493.1 0.61 +0.3 518,042 - SO0493.1 0.64 +0.7 518,042 - SO0493.1 0.64 +1.1 518,049 + SO0493.1 0.68 +0.7 518,049 + SO0493.1 0.68 +0.3 518,052 - SO0493.1 0.69 +0.2 518,076 + SO0493.1 0.79 +0.1 518,076 + SO0493.1 0.79 +1.1 518,076 + SO0493.1 0.79 -0.1 518,076 + SO0493.1 0.79 +0.3 518,076 + SO0493.1 0.79 -0.4 518,076 + SO0493.1 0.79 +0.7 518,081 + SO0493.1 0.82 -0.1 518,081 + SO0493.1 0.82 +1.2 518,084 - SO0493.1 0.83 -0.8 518,084 - SO0493.1 0.83 +0.2 518,084 - SO0493.1 0.83 -0.5 518,084 - SO0493.1 0.83 +0.3 518,084 - SO0493.1 0.83 +0.0 518,089 - SO0493.1 0.85 -0.1 518,091 + SO0493.1 0.86 +0.4 518,091 + SO0493.1 0.86 +0.0 518,091 + SO0493.1 0.86 +0.9 518,091 + SO0493.1 0.86 +0.2 518,091 + SO0493.1 0.86 -0.1 518,091 + SO0493.1 0.86 +0.1 518,091 + SO0493.1 0.86 -0.1 518,091 + SO0493.1 0.86 +0.4 518,091 + SO0493.1 0.86 -0.3 518,091 + SO0493.1 0.86 +0.1 518,091 + SO0493.1 0.86 -1.3 518,091 + SO0493.1 0.86 +0.5 518,091 + SO0493.1 0.86 +0.6 518,091 + SO0493.1 0.86 +0.2 518,091 + SO0493.1 0.86 +0.8 518,091 + SO0493.1 0.86 +0.3 518,091 + SO0493.1 0.86 +0.4 518,099 - SO0493.1 0.89 -0.1 518,099 - SO0493.1 0.89 +0.3 518,099 - SO0493.1 0.89 +0.2 518,099 - SO0493.1 0.89 -0.1 518,099 - SO0493.1 0.89 +0.3 518,099 - SO0493.1 0.89 +0.0 518,099 - SO0493.1 0.89 +0.1 518,099 - SO0493.1 0.89 -0.3 518,099 - SO0493.1 0.89 +0.1 518,099 - SO0493.1 0.89 +0.3 518,104 - -0.8 518,104 - -0.0 518,105 - +0.3 518,105 - +0.4 518,112 - +0.2 518,120 + -0.6 518,138 - -0.3 518,146 - -0.8 518,159 + -0.1 518,159 + +0.3 518,167 - +0.4 518,167 - +0.5 518,167 - +0.4 518,167 - -0.1 518,172 - +0.4 518,198 + -0.5 518,208 - +0.3 518,216 - -0.8 518,269 - -0.5 518,296 + +0.1 518,300 - +0.2 518,304 - -0.5 518,326 + -0.2 518,336 + -0.1 518,339 - -0.8 518,344 - -0.5 518,344 - -0.1 518,357 + -0.6 518,362 + -0.0 518,362 + +0.5 518,365 + +0.1 518,365 - +1.1 518,370 - -0.4 518,370 - +1.1 518,370 - -0.3 518,373 - +0.6 518,374 + -0.0 518,374 + -0.3 518,375 - -0.1 518,375 - +0.2 518,382 - +0.1 518,382 - -0.3 518,382 - +0.0 518,388 + +1.4
Or see this region's nucleotide sequence