Strain Fitness in Shewanella oneidensis MR-1 around SO0127

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0125 and SO0126 are separated by 21 nucleotidesSO0126 and SO0127 are separated by 62 nucleotidesSO0127 and SO0128 are separated by 106 nucleotidesSO0128 and SO0129 are separated by 114 nucleotides SO0125: SO0125 - conserved hypothetical protein (NCBI ptt file), at 133,124 to 133,489 SO0125 SO0126: SO0126 - conserved hypothetical protein (NCBI ptt file), at 133,511 to 134,311 SO0126 SO0127: SO0127 - hypothetical protein (NCBI ptt file), at 134,374 to 135,888 SO0127 SO0128: SO0128 - hypothetical protein (NCBI ptt file), at 135,995 to 136,195 SO0128 SO0129: SO0129 - conserved hypothetical protein TIGR00427 (NCBI ptt file), at 136,310 to 136,903 SO0129 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.410 kb on + strand, within SO0125at 133.410 kb on + strand, within SO0125at 133.421 kb on + strand, within SO0125at 133.467 kb on + strandat 133.487 kb on - strandat 133.587 kb on + strandat 133.592 kb on + strand, within SO0126at 133.732 kb on - strand, within SO0126at 133.797 kb on + strand, within SO0126at 133.797 kb on + strand, within SO0126at 133.797 kb on + strand, within SO0126at 133.797 kb on + strand, within SO0126at 133.797 kb on + strand, within SO0126at 133.805 kb on - strand, within SO0126at 133.805 kb on - strand, within SO0126at 133.846 kb on - strand, within SO0126at 133.937 kb on + strand, within SO0126at 133.954 kb on - strand, within SO0126at 133.984 kb on - strand, within SO0126at 134.022 kb on - strand, within SO0126at 134.101 kb on + strand, within SO0126at 134.101 kb on + strand, within SO0126at 134.118 kb on + strand, within SO0126at 134.124 kb on + strand, within SO0126at 134.128 kb on + strand, within SO0126at 134.337 kb on + strandat 134.338 kb on + strandat 134.340 kb on - strandat 134.345 kb on - strandat 134.350 kb on - strandat 134.379 kb on - strandat 134.383 kb on + strandat 134.423 kb on - strandat 134.434 kb on + strandat 134.434 kb on + strandat 134.452 kb on - strandat 134.482 kb on + strandat 134.482 kb on + strandat 134.562 kb on + strand, within SO0127at 134.631 kb on + strand, within SO0127at 134.631 kb on + strand, within SO0127at 134.639 kb on - strand, within SO0127at 134.740 kb on - strand, within SO0127at 134.741 kb on - strand, within SO0127at 134.788 kb on - strand, within SO0127at 134.858 kb on + strand, within SO0127at 134.910 kb on + strand, within SO0127at 134.940 kb on + strand, within SO0127at 134.940 kb on + strand, within SO0127at 134.940 kb on + strand, within SO0127at 134.940 kb on + strand, within SO0127at 134.948 kb on - strand, within SO0127at 134.955 kb on - strand, within SO0127at 135.015 kb on + strand, within SO0127at 135.090 kb on - strand, within SO0127at 135.090 kb on - strand, within SO0127at 135.097 kb on - strand, within SO0127at 135.099 kb on + strand, within SO0127at 135.105 kb on + strand, within SO0127at 135.105 kb on + strand, within SO0127at 135.107 kb on - strand, within SO0127at 135.149 kb on - strand, within SO0127at 135.182 kb on + strand, within SO0127at 135.190 kb on - strand, within SO0127at 135.267 kb on + strand, within SO0127at 135.268 kb on - strand, within SO0127at 135.268 kb on - strand, within SO0127at 135.280 kb on - strand, within SO0127at 135.280 kb on - strand, within SO0127at 135.351 kb on + strand, within SO0127at 135.368 kb on + strand, within SO0127at 135.423 kb on - strand, within SO0127at 135.423 kb on - strand, within SO0127at 135.433 kb on + strand, within SO0127at 135.441 kb on - strand, within SO0127at 135.441 kb on - strand, within SO0127at 135.557 kb on - strand, within SO0127at 135.657 kb on - strand, within SO0127at 135.691 kb on + strand, within SO0127at 135.699 kb on - strand, within SO0127at 135.810 kb on + strandat 135.810 kb on + strandat 135.862 kb on - strandat 135.885 kb on + strandat 135.885 kb on + strandat 135.885 kb on + strandat 135.885 kb on + strandat 135.888 kb on - strandat 135.893 kb on - strandat 135.893 kb on - strandat 135.893 kb on - strandat 135.893 kb on - strandat 135.893 kb on - strandat 135.894 kb on + strandat 135.976 kb on + strandat 135.984 kb on - strandat 136.214 kb on - strandat 136.214 kb on - strandat 136.429 kb on - strand, within SO0129at 136.487 kb on + strand, within SO0129at 136.497 kb on + strand, within SO0129at 136.662 kb on + strand, within SO0129at 136.664 kb on - strand, within SO0129at 136.690 kb on + strand, within SO0129at 136.829 kb on + strand, within SO0129at 136.838 kb on - strand, within SO0129

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
133,410 + SO0125 0.78 +0.2
133,410 + SO0125 0.78 -0.8
133,421 + SO0125 0.81 -0.3
133,467 + +0.2
133,487 - +0.9
133,587 + +0.2
133,592 + SO0126 0.10 +0.1
133,732 - SO0126 0.28 +0.2
133,797 + SO0126 0.36 +0.2
133,797 + SO0126 0.36 -0.1
133,797 + SO0126 0.36 +0.4
133,797 + SO0126 0.36 +0.5
133,797 + SO0126 0.36 -0.1
133,805 - SO0126 0.37 +0.3
133,805 - SO0126 0.37 -0.1
133,846 - SO0126 0.42 -0.0
133,937 + SO0126 0.53 -0.2
133,954 - SO0126 0.55 +0.6
133,984 - SO0126 0.59 +0.6
134,022 - SO0126 0.64 +0.3
134,101 + SO0126 0.74 +0.5
134,101 + SO0126 0.74 -0.2
134,118 + SO0126 0.76 -0.1
134,124 + SO0126 0.77 -0.5
134,128 + SO0126 0.77 +0.5
134,337 + -0.1
134,338 + -0.4
134,340 - -0.1
134,345 - +0.1
134,350 - -0.2
134,379 - +0.2
134,383 + -0.2
134,423 - -0.6
134,434 + -1.9
134,434 + -0.9
134,452 - -0.5
134,482 + -2.8
134,482 + -0.8
134,562 + SO0127 0.12 -2.7
134,631 + SO0127 0.17 -1.2
134,631 + SO0127 0.17 -1.6
134,639 - SO0127 0.17 -0.9
134,740 - SO0127 0.24 -0.9
134,741 - SO0127 0.24 -1.6
134,788 - SO0127 0.27 -1.1
134,858 + SO0127 0.32 -0.9
134,910 + SO0127 0.35 -0.4
134,940 + SO0127 0.37 -2.0
134,940 + SO0127 0.37 -0.9
134,940 + SO0127 0.37 -0.4
134,940 + SO0127 0.37 -2.6
134,948 - SO0127 0.38 -1.1
134,955 - SO0127 0.38 -2.4
135,015 + SO0127 0.42 -1.7
135,090 - SO0127 0.47 -0.6
135,090 - SO0127 0.47 -1.6
135,097 - SO0127 0.48 -1.4
135,099 + SO0127 0.48 -1.5
135,105 + SO0127 0.48 -2.2
135,105 + SO0127 0.48 -0.7
135,107 - SO0127 0.48 -1.5
135,149 - SO0127 0.51 +0.3
135,182 + SO0127 0.53 +0.5
135,190 - SO0127 0.54 -2.0
135,267 + SO0127 0.59 -0.9
135,268 - SO0127 0.59 -0.9
135,268 - SO0127 0.59 -1.0
135,280 - SO0127 0.60 -0.5
135,280 - SO0127 0.60 -0.9
135,351 + SO0127 0.64 -0.7
135,368 + SO0127 0.66 -1.3
135,423 - SO0127 0.69 -1.2
135,423 - SO0127 0.69 -1.1
135,433 + SO0127 0.70 -1.1
135,441 - SO0127 0.70 -2.1
135,441 - SO0127 0.70 -1.3
135,557 - SO0127 0.78 -1.5
135,657 - SO0127 0.85 -1.0
135,691 + SO0127 0.87 -0.4
135,699 - SO0127 0.87 -1.1
135,810 + -2.2
135,810 + -1.4
135,862 - -1.3
135,885 + -0.4
135,885 + -2.9
135,885 + -0.7
135,885 + -0.9
135,888 - -0.8
135,893 - -1.6
135,893 - -1.7
135,893 - -1.2
135,893 - -0.9
135,893 - -1.4
135,894 + -2.1
135,976 + -0.9
135,984 - -1.5
136,214 - -0.0
136,214 - +0.3
136,429 - SO0129 0.20 -0.3
136,487 + SO0129 0.30 -0.2
136,497 + SO0129 0.31 -0.3
136,662 + SO0129 0.59 +0.3
136,664 - SO0129 0.60 +0.1
136,690 + SO0129 0.64 +0.4
136,829 + SO0129 0.87 +0.5
136,838 - SO0129 0.89 -0.0

Or see this region's nucleotide sequence