Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08350

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08340 and PGA1_c08350 are separated by 105 nucleotidesPGA1_c08350 and PGA1_c08360 are separated by 135 nucleotidesPGA1_c08360 and PGA1_c08370 are separated by 86 nucleotides PGA1_c08340: PGA1_c08340 - methionyl-tRNA synthetase MetG, at 863,246 to 864,973 _c08340 PGA1_c08350: PGA1_c08350 - putative MFS-type transporter, at 865,079 to 866,302 _c08350 PGA1_c08360: PGA1_c08360 - Rhodanese-related sulfurtransferase, at 866,438 to 866,839 _c08360 PGA1_c08370: PGA1_c08370 - Rhodanese-related sulfurtransferase, at 866,926 to 867,327 _c08370 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 865.056 kb on + strandat 865.135 kb on + strandat 865.165 kb on - strandat 865.165 kb on - strandat 865.202 kb on + strand, within PGA1_c08350at 865.207 kb on + strand, within PGA1_c08350at 865.305 kb on - strand, within PGA1_c08350at 865.345 kb on + strand, within PGA1_c08350at 865.345 kb on + strand, within PGA1_c08350at 865.345 kb on + strand, within PGA1_c08350at 865.391 kb on + strand, within PGA1_c08350at 865.427 kb on + strand, within PGA1_c08350at 865.435 kb on - strand, within PGA1_c08350at 865.478 kb on + strand, within PGA1_c08350at 865.478 kb on + strand, within PGA1_c08350at 865.484 kb on - strand, within PGA1_c08350at 865.487 kb on + strand, within PGA1_c08350at 865.673 kb on - strand, within PGA1_c08350at 865.705 kb on - strand, within PGA1_c08350at 865.762 kb on + strand, within PGA1_c08350at 865.773 kb on + strand, within PGA1_c08350at 865.902 kb on - strand, within PGA1_c08350at 865.920 kb on - strand, within PGA1_c08350at 865.933 kb on - strand, within PGA1_c08350at 865.968 kb on + strand, within PGA1_c08350at 865.968 kb on + strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 865.976 kb on - strand, within PGA1_c08350at 866.013 kb on + strand, within PGA1_c08350at 866.013 kb on + strand, within PGA1_c08350at 866.013 kb on + strand, within PGA1_c08350at 866.013 kb on + strand, within PGA1_c08350at 866.021 kb on - strand, within PGA1_c08350at 866.021 kb on - strand, within PGA1_c08350at 866.038 kb on + strand, within PGA1_c08350at 866.038 kb on + strand, within PGA1_c08350at 866.038 kb on + strand, within PGA1_c08350at 866.046 kb on - strand, within PGA1_c08350at 866.046 kb on - strand, within PGA1_c08350at 866.076 kb on - strand, within PGA1_c08350at 866.076 kb on - strand, within PGA1_c08350at 866.101 kb on - strand, within PGA1_c08350at 866.122 kb on + strand, within PGA1_c08350at 866.200 kb on + strandat 866.200 kb on + strandat 866.227 kb on + strandat 866.227 kb on + strandat 866.241 kb on + strandat 866.311 kb on + strandat 866.319 kb on - strandat 866.319 kb on - strandat 866.319 kb on - strandat 866.339 kb on - strandat 866.429 kb on - strandat 866.477 kb on - strandat 866.490 kb on - strand, within PGA1_c08360at 866.586 kb on + strand, within PGA1_c08360at 866.586 kb on + strand, within PGA1_c08360at 866.593 kb on - strand, within PGA1_c08360at 866.594 kb on - strand, within PGA1_c08360at 866.600 kb on + strand, within PGA1_c08360at 866.685 kb on + strand, within PGA1_c08360at 866.735 kb on - strand, within PGA1_c08360at 866.760 kb on - strand, within PGA1_c08360at 866.771 kb on + strand, within PGA1_c08360at 866.795 kb on - strand, within PGA1_c08360at 866.799 kb on + strandat 866.804 kb on - strandat 866.848 kb on + strandat 866.855 kb on + strandat 866.958 kb on - strandat 867.001 kb on + strand, within PGA1_c08370at 867.016 kb on - strand, within PGA1_c08370at 867.104 kb on - strand, within PGA1_c08370at 867.107 kb on + strand, within PGA1_c08370at 867.115 kb on - strand, within PGA1_c08370at 867.130 kb on - strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.151 kb on + strand, within PGA1_c08370at 867.159 kb on - strand, within PGA1_c08370at 867.178 kb on + strand, within PGA1_c08370at 867.235 kb on - strand, within PGA1_c08370at 867.237 kb on + strand, within PGA1_c08370at 867.274 kb on + strand, within PGA1_c08370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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865,056 + -0.1
865,135 + +0.7
865,165 - -1.1
865,165 - -1.2
865,202 + PGA1_c08350 0.10 -2.2
865,207 + PGA1_c08350 0.10 -0.3
865,305 - PGA1_c08350 0.18 +0.6
865,345 + PGA1_c08350 0.22 +0.5
865,345 + PGA1_c08350 0.22 -1.1
865,345 + PGA1_c08350 0.22 -0.5
865,391 + PGA1_c08350 0.25 -0.2
865,427 + PGA1_c08350 0.28 +0.6
865,435 - PGA1_c08350 0.29 +1.8
865,478 + PGA1_c08350 0.33 +0.9
865,478 + PGA1_c08350 0.33 -0.2
865,484 - PGA1_c08350 0.33 -0.4
865,487 + PGA1_c08350 0.33 -0.3
865,673 - PGA1_c08350 0.49 +0.9
865,705 - PGA1_c08350 0.51 +0.4
865,762 + PGA1_c08350 0.56 +0.6
865,773 + PGA1_c08350 0.57 +0.2
865,902 - PGA1_c08350 0.67 +1.1
865,920 - PGA1_c08350 0.69 +1.2
865,933 - PGA1_c08350 0.70 -0.8
865,968 + PGA1_c08350 0.73 +0.4
865,968 + PGA1_c08350 0.73 +0.3
865,976 - PGA1_c08350 0.73 -0.7
865,976 - PGA1_c08350 0.73 -2.2
865,976 - PGA1_c08350 0.73 +0.8
865,976 - PGA1_c08350 0.73 -0.1
865,976 - PGA1_c08350 0.73 -0.0
865,976 - PGA1_c08350 0.73 +0.1
865,976 - PGA1_c08350 0.73 -1.5
866,013 + PGA1_c08350 0.76 -0.7
866,013 + PGA1_c08350 0.76 -1.9
866,013 + PGA1_c08350 0.76 -1.7
866,013 + PGA1_c08350 0.76 +1.9
866,021 - PGA1_c08350 0.77 -0.8
866,021 - PGA1_c08350 0.77 -1.1
866,038 + PGA1_c08350 0.78 -0.7
866,038 + PGA1_c08350 0.78 -1.4
866,038 + PGA1_c08350 0.78 -0.8
866,046 - PGA1_c08350 0.79 +0.6
866,046 - PGA1_c08350 0.79 +0.7
866,076 - PGA1_c08350 0.81 +0.4
866,076 - PGA1_c08350 0.81 -1.1
866,101 - PGA1_c08350 0.83 +0.6
866,122 + PGA1_c08350 0.85 +0.8
866,200 + -1.9
866,200 + -1.2
866,227 + +0.7
866,227 + -1.2
866,241 + -0.3
866,311 + +1.9
866,319 - +1.8
866,319 - -0.1
866,319 - +0.7
866,339 - -1.1
866,429 - -0.6
866,477 - -0.1
866,490 - PGA1_c08360 0.13 +1.2
866,586 + PGA1_c08360 0.37 -0.1
866,586 + PGA1_c08360 0.37 -0.1
866,593 - PGA1_c08360 0.39 +0.8
866,594 - PGA1_c08360 0.39 +0.8
866,600 + PGA1_c08360 0.40 +0.2
866,685 + PGA1_c08360 0.61 +0.9
866,735 - PGA1_c08360 0.74 +0.9
866,760 - PGA1_c08360 0.80 -0.2
866,771 + PGA1_c08360 0.83 -2.1
866,795 - PGA1_c08360 0.89 +0.9
866,799 + -0.9
866,804 - +0.4
866,848 + +0.9
866,855 + -1.1
866,958 - -0.1
867,001 + PGA1_c08370 0.19 -1.1
867,016 - PGA1_c08370 0.22 -0.1
867,104 - PGA1_c08370 0.44 +0.7
867,107 + PGA1_c08370 0.45 +1.4
867,115 - PGA1_c08370 0.47 +0.6
867,130 - PGA1_c08370 0.51 +0.3
867,132 + PGA1_c08370 0.51 +2.3
867,132 + PGA1_c08370 0.51 +0.6
867,132 + PGA1_c08370 0.51 -0.2
867,132 + PGA1_c08370 0.51 +0.6
867,151 + PGA1_c08370 0.56 +0.9
867,159 - PGA1_c08370 0.58 +0.8
867,178 + PGA1_c08370 0.63 +2.5
867,235 - PGA1_c08370 0.77 -1.4
867,237 + PGA1_c08370 0.77 +1.9
867,274 + PGA1_c08370 0.87 -0.1

Or see this region's nucleotide sequence