Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07270

Experiment: m.b. methylglyoxal 0.004 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c07260 and PGA1_c07270 are separated by 22 nucleotidesPGA1_c07270 and PGA1_c07280 are separated by 11 nucleotides PGA1_c07260: PGA1_c07260 - putative inositol 2-dehydrogenase, at 747,173 to 748,378 _c07260 PGA1_c07270: PGA1_c07270 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 748,401 to 749,294 _c07270 PGA1_c07280: PGA1_c07280 - putative oxidoreduktase, at 749,306 to 750,463 _c07280 Position (kb) 748 749 750Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 747.461 kb on - strand, within PGA1_c07260at 747.492 kb on - strand, within PGA1_c07260at 747.554 kb on + strand, within PGA1_c07260at 747.557 kb on - strand, within PGA1_c07260at 747.642 kb on - strand, within PGA1_c07260at 747.670 kb on + strand, within PGA1_c07260at 747.679 kb on - strand, within PGA1_c07260at 747.706 kb on + strand, within PGA1_c07260at 747.724 kb on - strand, within PGA1_c07260at 747.803 kb on - strand, within PGA1_c07260at 747.804 kb on - strand, within PGA1_c07260at 747.804 kb on - strand, within PGA1_c07260at 747.806 kb on + strand, within PGA1_c07260at 747.812 kb on + strand, within PGA1_c07260at 747.898 kb on + strand, within PGA1_c07260at 747.898 kb on + strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.945 kb on - strand, within PGA1_c07260at 747.947 kb on + strand, within PGA1_c07260at 748.052 kb on + strand, within PGA1_c07260at 748.090 kb on - strand, within PGA1_c07260at 748.101 kb on + strand, within PGA1_c07260at 748.109 kb on - strand, within PGA1_c07260at 748.139 kb on - strand, within PGA1_c07260at 748.147 kb on + strand, within PGA1_c07260at 748.158 kb on + strand, within PGA1_c07260at 748.158 kb on + strand, within PGA1_c07260at 748.166 kb on - strand, within PGA1_c07260at 748.193 kb on + strand, within PGA1_c07260at 748.202 kb on - strand, within PGA1_c07260at 748.276 kb on + strandat 748.287 kb on + strandat 748.287 kb on + strandat 748.295 kb on - strandat 748.297 kb on + strandat 748.304 kb on + strandat 748.346 kb on - strandat 748.437 kb on - strandat 748.485 kb on + strandat 748.485 kb on + strandat 748.490 kb on + strandat 748.516 kb on + strand, within PGA1_c07270at 748.521 kb on + strand, within PGA1_c07270at 748.524 kb on - strand, within PGA1_c07270at 748.530 kb on + strand, within PGA1_c07270at 748.570 kb on - strand, within PGA1_c07270at 748.658 kb on - strand, within PGA1_c07270at 748.663 kb on - strand, within PGA1_c07270at 748.837 kb on - strand, within PGA1_c07270at 748.850 kb on - strand, within PGA1_c07270at 749.026 kb on + strand, within PGA1_c07270at 749.034 kb on - strand, within PGA1_c07270at 749.044 kb on - strand, within PGA1_c07270at 749.057 kb on + strand, within PGA1_c07270at 749.065 kb on - strand, within PGA1_c07270at 749.210 kb on - strandat 749.234 kb on - strandat 749.240 kb on + strandat 749.254 kb on - strandat 749.361 kb on - strandat 749.381 kb on + strandat 749.389 kb on - strandat 749.451 kb on - strand, within PGA1_c07280at 749.493 kb on + strand, within PGA1_c07280at 749.503 kb on + strand, within PGA1_c07280at 749.532 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.540 kb on - strand, within PGA1_c07280at 749.542 kb on + strand, within PGA1_c07280at 749.549 kb on + strand, within PGA1_c07280at 749.607 kb on + strand, within PGA1_c07280at 749.640 kb on + strand, within PGA1_c07280at 749.640 kb on + strand, within PGA1_c07280at 749.683 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.692 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.710 kb on - strand, within PGA1_c07280at 749.743 kb on + strand, within PGA1_c07280at 749.743 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.877 kb on - strand, within PGA1_c07280at 749.909 kb on - strand, within PGA1_c07280at 749.920 kb on - strand, within PGA1_c07280at 749.922 kb on - strand, within PGA1_c07280at 749.944 kb on - strand, within PGA1_c07280at 749.961 kb on - strand, within PGA1_c07280at 749.968 kb on + strand, within PGA1_c07280at 749.975 kb on - strand, within PGA1_c07280at 750.003 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.076 kb on - strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.098 kb on - strand, within PGA1_c07280at 750.098 kb on - strand, within PGA1_c07280at 750.124 kb on - strand, within PGA1_c07280at 750.126 kb on + strand, within PGA1_c07280at 750.161 kb on - strand, within PGA1_c07280at 750.210 kb on + strand, within PGA1_c07280at 750.218 kb on - strand, within PGA1_c07280at 750.280 kb on + strand, within PGA1_c07280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
remove
747,461 - PGA1_c07260 0.24 +0.7
747,492 - PGA1_c07260 0.26 -0.3
747,554 + PGA1_c07260 0.32 -0.3
747,557 - PGA1_c07260 0.32 -0.3
747,642 - PGA1_c07260 0.39 +0.4
747,670 + PGA1_c07260 0.41 -1.8
747,679 - PGA1_c07260 0.42 -1.6
747,706 + PGA1_c07260 0.44 -0.4
747,724 - PGA1_c07260 0.46 -0.3
747,803 - PGA1_c07260 0.52 -0.3
747,804 - PGA1_c07260 0.52 -0.3
747,804 - PGA1_c07260 0.52 +0.3
747,806 + PGA1_c07260 0.52 +0.2
747,812 + PGA1_c07260 0.53 +1.4
747,898 + PGA1_c07260 0.60 -0.7
747,898 + PGA1_c07260 0.60 +0.0
747,906 - PGA1_c07260 0.61 -1.4
747,906 - PGA1_c07260 0.61 +0.6
747,906 - PGA1_c07260 0.61 +1.8
747,945 - PGA1_c07260 0.64 -0.6
747,947 + PGA1_c07260 0.64 -1.1
748,052 + PGA1_c07260 0.73 +0.9
748,090 - PGA1_c07260 0.76 +1.5
748,101 + PGA1_c07260 0.77 -0.2
748,109 - PGA1_c07260 0.78 +0.1
748,139 - PGA1_c07260 0.80 -1.4
748,147 + PGA1_c07260 0.81 -2.6
748,158 + PGA1_c07260 0.82 +0.1
748,158 + PGA1_c07260 0.82 -0.1
748,166 - PGA1_c07260 0.82 -1.0
748,193 + PGA1_c07260 0.85 +0.1
748,202 - PGA1_c07260 0.85 -0.4
748,276 + -1.0
748,287 + -1.2
748,287 + -1.1
748,295 - -0.3
748,297 + -0.3
748,304 + -1.1
748,346 - -0.6
748,437 - +0.7
748,485 + -1.4
748,485 + -0.3
748,490 + -1.6
748,516 + PGA1_c07270 0.13 -3.3
748,521 + PGA1_c07270 0.13 +0.5
748,524 - PGA1_c07270 0.14 -0.2
748,530 + PGA1_c07270 0.14 -1.8
748,570 - PGA1_c07270 0.19 -0.4
748,658 - PGA1_c07270 0.29 +0.1
748,663 - PGA1_c07270 0.29 -0.6
748,837 - PGA1_c07270 0.49 -0.9
748,850 - PGA1_c07270 0.50 -1.6
749,026 + PGA1_c07270 0.70 +0.1
749,034 - PGA1_c07270 0.71 +0.2
749,044 - PGA1_c07270 0.72 +0.9
749,057 + PGA1_c07270 0.73 -0.6
749,065 - PGA1_c07270 0.74 -1.0
749,210 - -0.3
749,234 - -0.2
749,240 + -1.6
749,254 - -0.9
749,361 - -0.2
749,381 + -0.2
749,389 - -0.9
749,451 - PGA1_c07280 0.13 -0.9
749,493 + PGA1_c07280 0.16 +0.6
749,503 + PGA1_c07280 0.17 -1.4
749,532 + PGA1_c07280 0.20 +1.4
749,537 + PGA1_c07280 0.20 -0.8
749,537 + PGA1_c07280 0.20 -1.4
749,537 + PGA1_c07280 0.20 -1.7
749,537 + PGA1_c07280 0.20 -0.9
749,537 + PGA1_c07280 0.20 +0.3
749,540 - PGA1_c07280 0.20 -0.8
749,542 + PGA1_c07280 0.20 +0.5
749,549 + PGA1_c07280 0.21 -0.3
749,607 + PGA1_c07280 0.26 -1.9
749,640 + PGA1_c07280 0.29 +0.4
749,640 + PGA1_c07280 0.29 -2.8
749,683 + PGA1_c07280 0.33 -0.7
749,689 + PGA1_c07280 0.33 -0.1
749,689 + PGA1_c07280 0.33 +0.2
749,689 + PGA1_c07280 0.33 -0.1
749,689 + PGA1_c07280 0.33 -1.6
749,692 - PGA1_c07280 0.33 -3.3
749,697 - PGA1_c07280 0.34 -1.6
749,697 - PGA1_c07280 0.34 -0.4
749,697 - PGA1_c07280 0.34 -0.8
749,710 - PGA1_c07280 0.35 +0.2
749,743 + PGA1_c07280 0.38 +1.1
749,743 + PGA1_c07280 0.38 +0.1
749,869 + PGA1_c07280 0.49 -2.6
749,869 + PGA1_c07280 0.49 +0.4
749,869 + PGA1_c07280 0.49 -0.9
749,869 + PGA1_c07280 0.49 -2.1
749,877 - PGA1_c07280 0.49 +1.4
749,909 - PGA1_c07280 0.52 -1.9
749,920 - PGA1_c07280 0.53 -0.9
749,922 - PGA1_c07280 0.53 -0.6
749,944 - PGA1_c07280 0.55 -0.7
749,961 - PGA1_c07280 0.57 +0.9
749,968 + PGA1_c07280 0.57 -2.5
749,975 - PGA1_c07280 0.58 -0.2
750,003 + PGA1_c07280 0.60 +0.3
750,046 + PGA1_c07280 0.64 -0.1
750,046 + PGA1_c07280 0.64 -0.9
750,046 + PGA1_c07280 0.64 -0.2
750,046 + PGA1_c07280 0.64 -1.3
750,046 + PGA1_c07280 0.64 -0.7
750,046 + PGA1_c07280 0.64 -1.8
750,046 + PGA1_c07280 0.64 -0.1
750,046 + PGA1_c07280 0.64 -1.4
750,046 + PGA1_c07280 0.64 +0.4
750,054 - PGA1_c07280 0.65 -0.9
750,054 - PGA1_c07280 0.65 +0.6
750,054 - PGA1_c07280 0.65 -0.9
750,054 - PGA1_c07280 0.65 -0.8
750,054 - PGA1_c07280 0.65 +0.5
750,054 - PGA1_c07280 0.65 +0.6
750,054 - PGA1_c07280 0.65 +0.0
750,054 - PGA1_c07280 0.65 -0.2
750,076 - PGA1_c07280 0.66 +0.2
750,083 + PGA1_c07280 0.67 +0.9
750,083 + PGA1_c07280 0.67 -1.4
750,083 + PGA1_c07280 0.67 -1.8
750,098 - PGA1_c07280 0.68 -2.4
750,098 - PGA1_c07280 0.68 -0.6
750,124 - PGA1_c07280 0.71 -0.0
750,126 + PGA1_c07280 0.71 -0.2
750,161 - PGA1_c07280 0.74 +0.6
750,210 + PGA1_c07280 0.78 -0.2
750,218 - PGA1_c07280 0.79 -2.0
750,280 + PGA1_c07280 0.84 +0.1

Or see this region's nucleotide sequence