Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07150

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07140 and PGA1_c07150 overlap by 4 nucleotidesPGA1_c07150 and PGA1_c07160 are separated by 19 nucleotides PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975 _c07140 PGA1_c07150: PGA1_c07150 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 734,972 to 735,772 _c07150 PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102 _c07160 Position (kb) 734 735 736Strain fitness (log2 ratio) -2 -1 0 1 2at 733.994 kb on + strand, within PGA1_c07140at 734.002 kb on - strand, within PGA1_c07140at 734.023 kb on + strand, within PGA1_c07140at 734.127 kb on + strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.169 kb on - strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.206 kb on + strand, within PGA1_c07140at 734.207 kb on - strand, within PGA1_c07140at 734.207 kb on - strand, within PGA1_c07140at 734.210 kb on - strand, within PGA1_c07140at 734.214 kb on - strand, within PGA1_c07140at 734.228 kb on + strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.408 kb on - strand, within PGA1_c07140at 734.443 kb on + strand, within PGA1_c07140at 734.512 kb on + strand, within PGA1_c07140at 734.534 kb on + strand, within PGA1_c07140at 734.542 kb on - strand, within PGA1_c07140at 734.542 kb on - strand, within PGA1_c07140at 734.552 kb on - strand, within PGA1_c07140at 734.554 kb on + strand, within PGA1_c07140at 734.579 kb on + strand, within PGA1_c07140at 734.579 kb on + strand, within PGA1_c07140at 734.587 kb on - strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.627 kb on - strand, within PGA1_c07140at 734.627 kb on - strand, within PGA1_c07140at 734.644 kb on + strand, within PGA1_c07140at 734.650 kb on + strand, within PGA1_c07140at 734.652 kb on - strand, within PGA1_c07140at 734.657 kb on - strand, within PGA1_c07140at 734.657 kb on - strand, within PGA1_c07140at 734.742 kb on + strand, within PGA1_c07140at 734.745 kb on - strand, within PGA1_c07140at 734.778 kb on + strand, within PGA1_c07140at 734.802 kb on + strand, within PGA1_c07140at 734.802 kb on + strand, within PGA1_c07140at 734.802 kb on + strand, within PGA1_c07140at 734.810 kb on - strand, within PGA1_c07140at 734.810 kb on - strand, within PGA1_c07140at 734.824 kb on - strand, within PGA1_c07140at 734.860 kb on + strandat 734.865 kb on + strandat 734.878 kb on - strandat 734.937 kb on - strandat 734.966 kb on - strandat 735.037 kb on + strandat 735.041 kb on - strandat 735.045 kb on - strandat 735.068 kb on + strand, within PGA1_c07150at 735.080 kb on - strand, within PGA1_c07150at 735.089 kb on - strand, within PGA1_c07150at 735.128 kb on + strand, within PGA1_c07150at 735.129 kb on + strand, within PGA1_c07150at 735.130 kb on - strand, within PGA1_c07150at 735.136 kb on - strand, within PGA1_c07150at 735.139 kb on + strand, within PGA1_c07150at 735.139 kb on + strand, within PGA1_c07150at 735.142 kb on - strand, within PGA1_c07150at 735.147 kb on - strand, within PGA1_c07150at 735.147 kb on - strand, within PGA1_c07150at 735.147 kb on - strand, within PGA1_c07150at 735.185 kb on + strand, within PGA1_c07150at 735.185 kb on + strand, within PGA1_c07150at 735.190 kb on + strand, within PGA1_c07150at 735.238 kb on - strand, within PGA1_c07150at 735.257 kb on + strand, within PGA1_c07150at 735.265 kb on - strand, within PGA1_c07150at 735.321 kb on + strand, within PGA1_c07150at 735.328 kb on + strand, within PGA1_c07150at 735.328 kb on + strand, within PGA1_c07150at 735.376 kb on - strand, within PGA1_c07150at 735.380 kb on + strand, within PGA1_c07150at 735.406 kb on - strand, within PGA1_c07150at 735.498 kb on + strand, within PGA1_c07150at 735.517 kb on - strand, within PGA1_c07150at 735.517 kb on - strand, within PGA1_c07150at 735.517 kb on - strand, within PGA1_c07150at 735.545 kb on - strand, within PGA1_c07150at 735.580 kb on - strand, within PGA1_c07150at 735.587 kb on + strand, within PGA1_c07150at 735.587 kb on + strand, within PGA1_c07150at 735.587 kb on + strand, within PGA1_c07150at 735.644 kb on + strand, within PGA1_c07150at 735.655 kb on + strand, within PGA1_c07150at 735.657 kb on + strand, within PGA1_c07150at 735.745 kb on - strandat 735.745 kb on - strandat 735.804 kb on - strandat 735.825 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.853 kb on - strandat 735.879 kb on + strandat 735.884 kb on + strandat 735.884 kb on + strandat 735.900 kb on + strandat 735.907 kb on + strandat 735.907 kb on + strandat 735.908 kb on - strandat 735.910 kb on + strandat 735.910 kb on + strandat 735.931 kb on - strand, within PGA1_c07160at 735.961 kb on + strand, within PGA1_c07160at 735.996 kb on - strand, within PGA1_c07160at 736.014 kb on - strand, within PGA1_c07160at 736.046 kb on - strand, within PGA1_c07160at 736.048 kb on + strand, within PGA1_c07160at 736.056 kb on - strand, within PGA1_c07160at 736.066 kb on - strand, within PGA1_c07160at 736.076 kb on + strand, within PGA1_c07160at 736.159 kb on - strand, within PGA1_c07160at 736.168 kb on - strand, within PGA1_c07160at 736.168 kb on - strand, within PGA1_c07160at 736.224 kb on - strand, within PGA1_c07160at 736.240 kb on - strand, within PGA1_c07160at 736.240 kb on - strand, within PGA1_c07160at 736.342 kb on - strand, within PGA1_c07160at 736.342 kb on - strand, within PGA1_c07160at 736.359 kb on - strand, within PGA1_c07160at 736.360 kb on + strand, within PGA1_c07160at 736.365 kb on + strand, within PGA1_c07160at 736.418 kb on + strand, within PGA1_c07160at 736.495 kb on + strand, within PGA1_c07160at 736.502 kb on - strand, within PGA1_c07160at 736.534 kb on + strand, within PGA1_c07160at 736.559 kb on + strand, within PGA1_c07160at 736.601 kb on - strand, within PGA1_c07160at 736.734 kb on - strand, within PGA1_c07160at 736.736 kb on + strand, within PGA1_c07160at 736.736 kb on + strand, within PGA1_c07160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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733,994 + PGA1_c07140 0.22 +1.2
734,002 - PGA1_c07140 0.22 -2.1
734,023 + PGA1_c07140 0.24 +0.3
734,127 + PGA1_c07140 0.32 +2.1
734,135 - PGA1_c07140 0.33 +0.3
734,135 - PGA1_c07140 0.33 +0.6
734,135 - PGA1_c07140 0.33 +0.4
734,135 - PGA1_c07140 0.33 -0.8
734,169 - PGA1_c07140 0.36 -1.1
734,183 + PGA1_c07140 0.37 -0.8
734,183 + PGA1_c07140 0.37 -0.7
734,183 + PGA1_c07140 0.37 -0.0
734,183 + PGA1_c07140 0.37 +0.1
734,183 + PGA1_c07140 0.37 -1.6
734,191 - PGA1_c07140 0.37 -1.0
734,191 - PGA1_c07140 0.37 -1.8
734,191 - PGA1_c07140 0.37 +0.9
734,206 + PGA1_c07140 0.39 +0.5
734,207 - PGA1_c07140 0.39 +0.8
734,207 - PGA1_c07140 0.39 -1.2
734,210 - PGA1_c07140 0.39 +0.1
734,214 - PGA1_c07140 0.39 +0.4
734,228 + PGA1_c07140 0.40 -0.3
734,236 - PGA1_c07140 0.41 +1.3
734,236 - PGA1_c07140 0.41 -0.2
734,236 - PGA1_c07140 0.41 +0.3
734,236 - PGA1_c07140 0.41 +0.3
734,394 + PGA1_c07140 0.54 +1.2
734,394 + PGA1_c07140 0.54 -1.1
734,394 + PGA1_c07140 0.54 -0.3
734,408 - PGA1_c07140 0.55 -1.7
734,443 + PGA1_c07140 0.57 -1.0
734,512 + PGA1_c07140 0.63 -0.6
734,534 + PGA1_c07140 0.65 +1.3
734,542 - PGA1_c07140 0.65 -0.5
734,542 - PGA1_c07140 0.65 -1.1
734,552 - PGA1_c07140 0.66 -0.9
734,554 + PGA1_c07140 0.66 -1.3
734,579 + PGA1_c07140 0.68 +0.1
734,579 + PGA1_c07140 0.68 +0.0
734,587 - PGA1_c07140 0.69 -0.7
734,619 + PGA1_c07140 0.72 -0.5
734,619 + PGA1_c07140 0.72 -0.9
734,619 + PGA1_c07140 0.72 -0.1
734,627 - PGA1_c07140 0.72 +0.2
734,627 - PGA1_c07140 0.72 +0.3
734,644 + PGA1_c07140 0.74 -0.6
734,650 + PGA1_c07140 0.74 -0.5
734,652 - PGA1_c07140 0.74 +0.8
734,657 - PGA1_c07140 0.75 -0.3
734,657 - PGA1_c07140 0.75 -2.1
734,742 + PGA1_c07140 0.81 -1.2
734,745 - PGA1_c07140 0.82 -1.4
734,778 + PGA1_c07140 0.84 +0.2
734,802 + PGA1_c07140 0.86 +0.5
734,802 + PGA1_c07140 0.86 +0.3
734,802 + PGA1_c07140 0.86 +0.4
734,810 - PGA1_c07140 0.87 +0.4
734,810 - PGA1_c07140 0.87 -0.4
734,824 - PGA1_c07140 0.88 -0.5
734,860 + +0.9
734,865 + -1.1
734,878 - -0.7
734,937 - -0.6
734,966 - +1.4
735,037 + -0.4
735,041 - +0.5
735,045 - -0.4
735,068 + PGA1_c07150 0.12 -1.9
735,080 - PGA1_c07150 0.13 +0.6
735,089 - PGA1_c07150 0.15 -0.5
735,128 + PGA1_c07150 0.19 -0.8
735,129 + PGA1_c07150 0.20 +1.5
735,130 - PGA1_c07150 0.20 -0.5
735,136 - PGA1_c07150 0.20 +0.9
735,139 + PGA1_c07150 0.21 +0.1
735,139 + PGA1_c07150 0.21 +0.3
735,142 - PGA1_c07150 0.21 -1.2
735,147 - PGA1_c07150 0.22 +0.2
735,147 - PGA1_c07150 0.22 -1.3
735,147 - PGA1_c07150 0.22 +0.9
735,185 + PGA1_c07150 0.27 -1.4
735,185 + PGA1_c07150 0.27 +0.5
735,190 + PGA1_c07150 0.27 -0.6
735,238 - PGA1_c07150 0.33 -0.7
735,257 + PGA1_c07150 0.36 +0.2
735,265 - PGA1_c07150 0.37 -1.2
735,321 + PGA1_c07150 0.44 +0.3
735,328 + PGA1_c07150 0.44 -0.5
735,328 + PGA1_c07150 0.44 -2.2
735,376 - PGA1_c07150 0.50 +0.1
735,380 + PGA1_c07150 0.51 -1.5
735,406 - PGA1_c07150 0.54 -0.2
735,498 + PGA1_c07150 0.66 -0.2
735,517 - PGA1_c07150 0.68 -2.1
735,517 - PGA1_c07150 0.68 -0.2
735,517 - PGA1_c07150 0.68 +0.2
735,545 - PGA1_c07150 0.72 -2.2
735,580 - PGA1_c07150 0.76 +0.0
735,587 + PGA1_c07150 0.77 +0.6
735,587 + PGA1_c07150 0.77 -1.1
735,587 + PGA1_c07150 0.77 +1.1
735,644 + PGA1_c07150 0.84 -1.5
735,655 + PGA1_c07150 0.85 -0.2
735,657 + PGA1_c07150 0.86 -0.2
735,745 - +0.8
735,745 - -0.7
735,804 - -0.7
735,825 + -0.5
735,840 + -0.6
735,840 + -0.9
735,840 + -1.4
735,840 + +0.5
735,840 + -0.0
735,848 - -1.8
735,848 - -0.8
735,848 - +1.6
735,848 - -0.6
735,848 - -0.4
735,848 - -0.2
735,848 - -0.1
735,853 - -0.1
735,879 + -0.6
735,884 + -2.1
735,884 + -0.6
735,900 + -0.1
735,907 + +0.3
735,907 + -0.1
735,908 - +0.3
735,910 + +1.6
735,910 + -0.4
735,931 - PGA1_c07160 0.11 +0.3
735,961 + PGA1_c07160 0.13 +0.5
735,996 - PGA1_c07160 0.16 +0.5
736,014 - PGA1_c07160 0.17 +0.3
736,046 - PGA1_c07160 0.19 -0.8
736,048 + PGA1_c07160 0.20 -1.0
736,056 - PGA1_c07160 0.20 -1.9
736,066 - PGA1_c07160 0.21 +1.3
736,076 + PGA1_c07160 0.22 -1.9
736,159 - PGA1_c07160 0.28 -0.2
736,168 - PGA1_c07160 0.29 -0.9
736,168 - PGA1_c07160 0.29 -1.8
736,224 - PGA1_c07160 0.33 -0.3
736,240 - PGA1_c07160 0.34 -0.1
736,240 - PGA1_c07160 0.34 +1.1
736,342 - PGA1_c07160 0.42 -2.4
736,342 - PGA1_c07160 0.42 +0.5
736,359 - PGA1_c07160 0.43 +0.6
736,360 + PGA1_c07160 0.43 +0.8
736,365 + PGA1_c07160 0.44 -1.4
736,418 + PGA1_c07160 0.48 -2.5
736,495 + PGA1_c07160 0.54 +0.6
736,502 - PGA1_c07160 0.54 -1.7
736,534 + PGA1_c07160 0.57 -0.5
736,559 + PGA1_c07160 0.59 +1.2
736,601 - PGA1_c07160 0.62 +0.4
736,734 - PGA1_c07160 0.72 +0.9
736,736 + PGA1_c07160 0.72 -0.6
736,736 + PGA1_c07160 0.72 -0.1

Or see this region's nucleotide sequence