Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07120 and PGA1_c07130 are separated by 147 nucleotides PGA1_c07130 and PGA1_c07140 are separated by 4 nucleotides PGA1_c07140 and PGA1_c07150 overlap by 4 nucleotides PGA1_c07150 and PGA1_c07160 are separated by 19 nucleotides
PGA1_c07120: PGA1_c07120 - putative universal stress protein, at 732,680 to 733,114
_c07120
PGA1_c07130: PGA1_c07130 - putative leucine-responsive regulatory protein, at 733,262 to 733,717
_c07130
PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975
_c07140
PGA1_c07150: PGA1_c07150 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 734,972 to 735,772
_c07150
PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102
_c07160
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.818 kb on + strand, within PGA1_c07120 at 732.826 kb on - strand, within PGA1_c07120 at 732.826 kb on - strand, within PGA1_c07120 at 732.828 kb on - strand, within PGA1_c07120 at 732.870 kb on - strand, within PGA1_c07120 at 732.870 kb on - strand, within PGA1_c07120 at 732.897 kb on + strand, within PGA1_c07120 at 733.034 kb on - strand, within PGA1_c07120 at 733.046 kb on - strand, within PGA1_c07120 at 733.121 kb on + strand at 733.123 kb on + strand at 733.128 kb on + strand at 733.131 kb on - strand at 733.356 kb on - strand, within PGA1_c07130 at 733.356 kb on - strand, within PGA1_c07130 at 733.371 kb on - strand, within PGA1_c07130 at 733.435 kb on + strand, within PGA1_c07130 at 733.440 kb on + strand, within PGA1_c07130 at 733.440 kb on + strand, within PGA1_c07130 at 733.448 kb on - strand, within PGA1_c07130 at 733.448 kb on - strand, within PGA1_c07130 at 733.527 kb on + strand, within PGA1_c07130 at 733.527 kb on + strand, within PGA1_c07130 at 733.535 kb on - strand, within PGA1_c07130 at 733.543 kb on - strand, within PGA1_c07130 at 733.596 kb on + strand, within PGA1_c07130 at 733.604 kb on - strand, within PGA1_c07130 at 733.639 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.657 kb on + strand, within PGA1_c07130 at 733.665 kb on - strand, within PGA1_c07130 at 733.665 kb on - strand, within PGA1_c07130 at 733.665 kb on - strand, within PGA1_c07130 at 733.665 kb on - strand, within PGA1_c07130 at 733.665 kb on - strand, within PGA1_c07130 at 733.669 kb on + strand, within PGA1_c07130 at 733.759 kb on + strand at 733.765 kb on + strand at 733.775 kb on - strand at 733.775 kb on - strand at 733.798 kb on + strand at 733.819 kb on - strand at 733.819 kb on - strand at 733.825 kb on - strand at 733.842 kb on - strand at 733.842 kb on - strand at 733.846 kb on - strand at 733.848 kb on + strand, within PGA1_c07140 at 733.853 kb on + strand, within PGA1_c07140 at 733.853 kb on + strand, within PGA1_c07140 at 733.861 kb on - strand, within PGA1_c07140 at 733.904 kb on + strand, within PGA1_c07140 at 733.934 kb on + strand, within PGA1_c07140 at 733.942 kb on - strand, within PGA1_c07140 at 733.942 kb on - strand, within PGA1_c07140 at 733.949 kb on + strand, within PGA1_c07140 at 733.949 kb on + strand, within PGA1_c07140 at 733.965 kb on - strand, within PGA1_c07140 at 733.994 kb on + strand, within PGA1_c07140 at 734.002 kb on - strand, within PGA1_c07140 at 734.023 kb on + strand, within PGA1_c07140 at 734.127 kb on + strand, within PGA1_c07140 at 734.135 kb on - strand, within PGA1_c07140 at 734.135 kb on - strand, within PGA1_c07140 at 734.135 kb on - strand, within PGA1_c07140 at 734.135 kb on - strand, within PGA1_c07140 at 734.169 kb on - strand, within PGA1_c07140 at 734.183 kb on + strand, within PGA1_c07140 at 734.183 kb on + strand, within PGA1_c07140 at 734.183 kb on + strand, within PGA1_c07140 at 734.183 kb on + strand, within PGA1_c07140 at 734.183 kb on + strand, within PGA1_c07140 at 734.191 kb on - strand, within PGA1_c07140 at 734.191 kb on - strand, within PGA1_c07140 at 734.191 kb on - strand, within PGA1_c07140 at 734.206 kb on + strand, within PGA1_c07140 at 734.207 kb on - strand, within PGA1_c07140 at 734.207 kb on - strand, within PGA1_c07140 at 734.210 kb on - strand, within PGA1_c07140 at 734.214 kb on - strand, within PGA1_c07140 at 734.228 kb on + strand, within PGA1_c07140 at 734.236 kb on - strand, within PGA1_c07140 at 734.236 kb on - strand, within PGA1_c07140 at 734.236 kb on - strand, within PGA1_c07140 at 734.236 kb on - strand, within PGA1_c07140 at 734.394 kb on + strand, within PGA1_c07140 at 734.394 kb on + strand, within PGA1_c07140 at 734.394 kb on + strand, within PGA1_c07140 at 734.408 kb on - strand, within PGA1_c07140 at 734.443 kb on + strand, within PGA1_c07140 at 734.512 kb on + strand, within PGA1_c07140 at 734.534 kb on + strand, within PGA1_c07140 at 734.542 kb on - strand, within PGA1_c07140 at 734.542 kb on - strand, within PGA1_c07140 at 734.552 kb on - strand, within PGA1_c07140 at 734.554 kb on + strand, within PGA1_c07140 at 734.579 kb on + strand, within PGA1_c07140 at 734.579 kb on + strand, within PGA1_c07140 at 734.587 kb on - strand, within PGA1_c07140 at 734.619 kb on + strand, within PGA1_c07140 at 734.619 kb on + strand, within PGA1_c07140 at 734.619 kb on + strand, within PGA1_c07140 at 734.627 kb on - strand, within PGA1_c07140 at 734.627 kb on - strand, within PGA1_c07140 at 734.644 kb on + strand, within PGA1_c07140 at 734.650 kb on + strand, within PGA1_c07140 at 734.652 kb on - strand, within PGA1_c07140 at 734.657 kb on - strand, within PGA1_c07140 at 734.657 kb on - strand, within PGA1_c07140 at 734.742 kb on + strand, within PGA1_c07140 at 734.745 kb on - strand, within PGA1_c07140 at 734.778 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.802 kb on + strand, within PGA1_c07140 at 734.810 kb on - strand, within PGA1_c07140 at 734.810 kb on - strand, within PGA1_c07140 at 734.824 kb on - strand, within PGA1_c07140 at 734.860 kb on + strand at 734.865 kb on + strand at 734.878 kb on - strand at 734.937 kb on - strand at 734.966 kb on - strand at 735.037 kb on + strand at 735.041 kb on - strand at 735.045 kb on - strand at 735.068 kb on + strand, within PGA1_c07150 at 735.080 kb on - strand, within PGA1_c07150 at 735.089 kb on - strand, within PGA1_c07150 at 735.128 kb on + strand, within PGA1_c07150 at 735.129 kb on + strand, within PGA1_c07150 at 735.130 kb on - strand, within PGA1_c07150 at 735.136 kb on - strand, within PGA1_c07150 at 735.139 kb on + strand, within PGA1_c07150 at 735.139 kb on + strand, within PGA1_c07150 at 735.142 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.147 kb on - strand, within PGA1_c07150 at 735.185 kb on + strand, within PGA1_c07150 at 735.185 kb on + strand, within PGA1_c07150 at 735.190 kb on + strand, within PGA1_c07150 at 735.238 kb on - strand, within PGA1_c07150 at 735.257 kb on + strand, within PGA1_c07150 at 735.265 kb on - strand, within PGA1_c07150 at 735.321 kb on + strand, within PGA1_c07150 at 735.328 kb on + strand, within PGA1_c07150 at 735.328 kb on + strand, within PGA1_c07150 at 735.376 kb on - strand, within PGA1_c07150 at 735.380 kb on + strand, within PGA1_c07150 at 735.406 kb on - strand, within PGA1_c07150 at 735.498 kb on + strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.517 kb on - strand, within PGA1_c07150 at 735.545 kb on - strand, within PGA1_c07150 at 735.580 kb on - strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.587 kb on + strand, within PGA1_c07150 at 735.644 kb on + strand, within PGA1_c07150 at 735.655 kb on + strand, within PGA1_c07150 at 735.657 kb on + strand, within PGA1_c07150 at 735.745 kb on - strand at 735.745 kb on - strand at 735.804 kb on - strand at 735.825 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.840 kb on + strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.848 kb on - strand at 735.853 kb on - strand at 735.879 kb on + strand at 735.884 kb on + strand at 735.884 kb on + strand at 735.900 kb on + strand at 735.907 kb on + strand at 735.907 kb on + strand at 735.908 kb on - strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.931 kb on - strand, within PGA1_c07160 at 735.961 kb on + strand, within PGA1_c07160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 732,818 + PGA1_c07120 0.32 -1.1 732,826 - PGA1_c07120 0.34 -0.9 732,826 - PGA1_c07120 0.34 -1.6 732,828 - PGA1_c07120 0.34 -0.4 732,870 - PGA1_c07120 0.44 -2.6 732,870 - PGA1_c07120 0.44 +0.4 732,897 + PGA1_c07120 0.50 -1.4 733,034 - PGA1_c07120 0.81 -0.4 733,046 - PGA1_c07120 0.84 -1.5 733,121 + -1.5 733,123 + +2.5 733,128 + +0.1 733,131 - +2.3 733,356 - PGA1_c07130 0.21 +0.4 733,356 - PGA1_c07130 0.21 -0.1 733,371 - PGA1_c07130 0.24 -0.1 733,435 + PGA1_c07130 0.38 -0.1 733,440 + PGA1_c07130 0.39 +0.2 733,440 + PGA1_c07130 0.39 +0.2 733,448 - PGA1_c07130 0.41 -0.9 733,448 - PGA1_c07130 0.41 -1.4 733,527 + PGA1_c07130 0.58 -0.6 733,527 + PGA1_c07130 0.58 +0.5 733,535 - PGA1_c07130 0.60 -1.6 733,543 - PGA1_c07130 0.62 +0.5 733,596 + PGA1_c07130 0.73 -0.5 733,604 - PGA1_c07130 0.75 +1.2 733,639 + PGA1_c07130 0.83 -0.3 733,657 + PGA1_c07130 0.87 +1.9 733,657 + PGA1_c07130 0.87 -0.7 733,657 + PGA1_c07130 0.87 +0.4 733,657 + PGA1_c07130 0.87 -0.2 733,657 + PGA1_c07130 0.87 -0.6 733,657 + PGA1_c07130 0.87 -0.1 733,657 + PGA1_c07130 0.87 -0.4 733,665 - PGA1_c07130 0.88 -0.4 733,665 - PGA1_c07130 0.88 -1.6 733,665 - PGA1_c07130 0.88 +0.2 733,665 - PGA1_c07130 0.88 +1.1 733,665 - PGA1_c07130 0.88 -1.8 733,669 + PGA1_c07130 0.89 -0.6 733,759 + +0.6 733,765 + +0.1 733,775 - -1.2 733,775 - -3.2 733,798 + -0.1 733,819 - -0.3 733,819 - -1.6 733,825 - -1.1 733,842 - +1.1 733,842 - +0.0 733,846 - +0.5 733,848 + PGA1_c07140 0.10 +0.5 733,853 + PGA1_c07140 0.10 +1.2 733,853 + PGA1_c07140 0.10 +0.8 733,861 - PGA1_c07140 0.11 -3.0 733,904 + PGA1_c07140 0.15 -0.5 733,934 + PGA1_c07140 0.17 -2.7 733,942 - PGA1_c07140 0.18 -0.5 733,942 - PGA1_c07140 0.18 -2.4 733,949 + PGA1_c07140 0.18 -1.6 733,949 + PGA1_c07140 0.18 +0.0 733,965 - PGA1_c07140 0.19 -0.6 733,994 + PGA1_c07140 0.22 +1.2 734,002 - PGA1_c07140 0.22 -2.1 734,023 + PGA1_c07140 0.24 +0.3 734,127 + PGA1_c07140 0.32 +2.1 734,135 - PGA1_c07140 0.33 +0.3 734,135 - PGA1_c07140 0.33 +0.6 734,135 - PGA1_c07140 0.33 +0.4 734,135 - PGA1_c07140 0.33 -0.8 734,169 - PGA1_c07140 0.36 -1.1 734,183 + PGA1_c07140 0.37 -0.8 734,183 + PGA1_c07140 0.37 -0.7 734,183 + PGA1_c07140 0.37 -0.0 734,183 + PGA1_c07140 0.37 +0.1 734,183 + PGA1_c07140 0.37 -1.6 734,191 - PGA1_c07140 0.37 -1.0 734,191 - PGA1_c07140 0.37 -1.8 734,191 - PGA1_c07140 0.37 +0.9 734,206 + PGA1_c07140 0.39 +0.5 734,207 - PGA1_c07140 0.39 +0.8 734,207 - PGA1_c07140 0.39 -1.2 734,210 - PGA1_c07140 0.39 +0.1 734,214 - PGA1_c07140 0.39 +0.4 734,228 + PGA1_c07140 0.40 -0.3 734,236 - PGA1_c07140 0.41 +1.3 734,236 - PGA1_c07140 0.41 -0.2 734,236 - PGA1_c07140 0.41 +0.3 734,236 - PGA1_c07140 0.41 +0.3 734,394 + PGA1_c07140 0.54 +1.2 734,394 + PGA1_c07140 0.54 -1.1 734,394 + PGA1_c07140 0.54 -0.3 734,408 - PGA1_c07140 0.55 -1.7 734,443 + PGA1_c07140 0.57 -1.0 734,512 + PGA1_c07140 0.63 -0.6 734,534 + PGA1_c07140 0.65 +1.3 734,542 - PGA1_c07140 0.65 -0.5 734,542 - PGA1_c07140 0.65 -1.1 734,552 - PGA1_c07140 0.66 -0.9 734,554 + PGA1_c07140 0.66 -1.3 734,579 + PGA1_c07140 0.68 +0.1 734,579 + PGA1_c07140 0.68 +0.0 734,587 - PGA1_c07140 0.69 -0.7 734,619 + PGA1_c07140 0.72 -0.5 734,619 + PGA1_c07140 0.72 -0.9 734,619 + PGA1_c07140 0.72 -0.1 734,627 - PGA1_c07140 0.72 +0.2 734,627 - PGA1_c07140 0.72 +0.3 734,644 + PGA1_c07140 0.74 -0.6 734,650 + PGA1_c07140 0.74 -0.5 734,652 - PGA1_c07140 0.74 +0.8 734,657 - PGA1_c07140 0.75 -0.3 734,657 - PGA1_c07140 0.75 -2.1 734,742 + PGA1_c07140 0.81 -1.2 734,745 - PGA1_c07140 0.82 -1.4 734,778 + PGA1_c07140 0.84 +0.2 734,802 + PGA1_c07140 0.86 +0.5 734,802 + PGA1_c07140 0.86 +0.3 734,802 + PGA1_c07140 0.86 +0.4 734,810 - PGA1_c07140 0.87 +0.4 734,810 - PGA1_c07140 0.87 -0.4 734,824 - PGA1_c07140 0.88 -0.5 734,860 + +0.9 734,865 + -1.1 734,878 - -0.7 734,937 - -0.6 734,966 - +1.4 735,037 + -0.4 735,041 - +0.5 735,045 - -0.4 735,068 + PGA1_c07150 0.12 -1.9 735,080 - PGA1_c07150 0.13 +0.6 735,089 - PGA1_c07150 0.15 -0.5 735,128 + PGA1_c07150 0.19 -0.8 735,129 + PGA1_c07150 0.20 +1.5 735,130 - PGA1_c07150 0.20 -0.5 735,136 - PGA1_c07150 0.20 +0.9 735,139 + PGA1_c07150 0.21 +0.1 735,139 + PGA1_c07150 0.21 +0.3 735,142 - PGA1_c07150 0.21 -1.2 735,147 - PGA1_c07150 0.22 +0.2 735,147 - PGA1_c07150 0.22 -1.3 735,147 - PGA1_c07150 0.22 +0.9 735,185 + PGA1_c07150 0.27 -1.4 735,185 + PGA1_c07150 0.27 +0.5 735,190 + PGA1_c07150 0.27 -0.6 735,238 - PGA1_c07150 0.33 -0.7 735,257 + PGA1_c07150 0.36 +0.2 735,265 - PGA1_c07150 0.37 -1.2 735,321 + PGA1_c07150 0.44 +0.3 735,328 + PGA1_c07150 0.44 -0.5 735,328 + PGA1_c07150 0.44 -2.2 735,376 - PGA1_c07150 0.50 +0.1 735,380 + PGA1_c07150 0.51 -1.5 735,406 - PGA1_c07150 0.54 -0.2 735,498 + PGA1_c07150 0.66 -0.2 735,517 - PGA1_c07150 0.68 -2.1 735,517 - PGA1_c07150 0.68 -0.2 735,517 - PGA1_c07150 0.68 +0.2 735,545 - PGA1_c07150 0.72 -2.2 735,580 - PGA1_c07150 0.76 +0.0 735,587 + PGA1_c07150 0.77 +0.6 735,587 + PGA1_c07150 0.77 -1.1 735,587 + PGA1_c07150 0.77 +1.1 735,644 + PGA1_c07150 0.84 -1.5 735,655 + PGA1_c07150 0.85 -0.2 735,657 + PGA1_c07150 0.86 -0.2 735,745 - +0.8 735,745 - -0.7 735,804 - -0.7 735,825 + -0.5 735,840 + -0.6 735,840 + -0.9 735,840 + -1.4 735,840 + +0.5 735,840 + -0.0 735,848 - -1.8 735,848 - -0.8 735,848 - +1.6 735,848 - -0.6 735,848 - -0.4 735,848 - -0.2 735,848 - -0.1 735,853 - -0.1 735,879 + -0.6 735,884 + -2.1 735,884 + -0.6 735,900 + -0.1 735,907 + +0.3 735,907 + -0.1 735,908 - +0.3 735,910 + +1.6 735,910 + -0.4 735,931 - PGA1_c07160 0.11 +0.3 735,961 + PGA1_c07160 0.13 +0.5
Or see this region's nucleotide sequence