Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05770 and PGA1_c05780 are separated by 183 nucleotides PGA1_c05780 and PGA1_c05790 are separated by 148 nucleotides PGA1_c05790 and PGA1_c05800 are separated by 132 nucleotides
PGA1_c05770: PGA1_c05770 - Uncharacterized protein conserved in bacteria, at 590,644 to 591,351
_c05770
PGA1_c05780: PGA1_c05780 - transaldolase Tal, at 591,535 to 592,188
_c05780
PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532
_c05790
PGA1_c05800: PGA1_c05800 - YeeE/YedE family (DUF395)., at 594,665 to 595,729
_c05800
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.352 kb on - strand at 591.365 kb on - strand at 591.368 kb on + strand at 591.368 kb on + strand at 591.387 kb on + strand at 591.397 kb on - strand at 591.452 kb on + strand at 591.457 kb on + strand at 591.457 kb on + strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.465 kb on - strand at 591.465 kb on - strand at 591.516 kb on - strand at 592.217 kb on - strand at 594.603 kb on + strand at 594.611 kb on - strand at 594.681 kb on + strand at 594.712 kb on + strand at 594.717 kb on + strand at 594.809 kb on - strand, within PGA1_c05800 at 594.811 kb on + strand, within PGA1_c05800 at 594.842 kb on + strand, within PGA1_c05800 at 594.919 kb on - strand, within PGA1_c05800 at 594.926 kb on + strand, within PGA1_c05800 at 595.016 kb on - strand, within PGA1_c05800 at 595.021 kb on - strand, within PGA1_c05800 at 595.093 kb on + strand, within PGA1_c05800 at 595.221 kb on + strand, within PGA1_c05800 at 595.246 kb on + strand, within PGA1_c05800 at 595.246 kb on + strand, within PGA1_c05800 at 595.246 kb on + strand, within PGA1_c05800 at 595.254 kb on - strand, within PGA1_c05800 at 595.254 kb on - strand, within PGA1_c05800 at 595.254 kb on - strand, within PGA1_c05800 at 595.365 kb on - strand, within PGA1_c05800 at 595.398 kb on + strand, within PGA1_c05800 at 595.400 kb on - strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.524 kb on + strand, within PGA1_c05800 at 595.532 kb on - strand, within PGA1_c05800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 591,352 - -0.1 591,365 - +0.5 591,368 + +1.1 591,368 + +1.7 591,387 + +0.1 591,397 - -0.5 591,452 + -0.1 591,457 + -0.5 591,457 + -0.5 591,460 - -0.7 591,460 - +1.1 591,460 - +1.1 591,460 - -1.5 591,465 - +0.9 591,465 - +1.5 591,516 - -0.3 592,217 - -0.2 594,603 + +2.4 594,611 - +1.1 594,681 + -0.6 594,712 + -0.9 594,717 + +1.7 594,809 - PGA1_c05800 0.14 -0.8 594,811 + PGA1_c05800 0.14 +2.3 594,842 + PGA1_c05800 0.17 +0.6 594,919 - PGA1_c05800 0.24 -0.2 594,926 + PGA1_c05800 0.25 -0.5 595,016 - PGA1_c05800 0.33 -0.2 595,021 - PGA1_c05800 0.33 -0.1 595,093 + PGA1_c05800 0.40 -0.4 595,221 + PGA1_c05800 0.52 -0.5 595,246 + PGA1_c05800 0.55 +1.1 595,246 + PGA1_c05800 0.55 +1.1 595,246 + PGA1_c05800 0.55 +0.5 595,254 - PGA1_c05800 0.55 +0.0 595,254 - PGA1_c05800 0.55 +1.5 595,254 - PGA1_c05800 0.55 +1.3 595,365 - PGA1_c05800 0.66 +1.3 595,398 + PGA1_c05800 0.69 -0.0 595,400 - PGA1_c05800 0.69 +0.0 595,524 + PGA1_c05800 0.81 +0.9 595,524 + PGA1_c05800 0.81 +0.5 595,524 + PGA1_c05800 0.81 -2.7 595,524 + PGA1_c05800 0.81 +0.6 595,532 - PGA1_c05800 0.81 -0.1
Or see this region's nucleotide sequence