Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00520 and PGA1_c00530 are separated by 67 nucleotides PGA1_c00530 and PGA1_c00540 are separated by 5 nucleotides PGA1_c00540 and PGA1_c00550 are separated by 150 nucleotides
PGA1_c00520: PGA1_c00520 - tRNA (guanine-N(1)-)-methyltransferase TrmD, at 56,094 to 56,894
_c00520
PGA1_c00530: PGA1_c00530 - Phosphotransferase enzyme family., at 56,962 to 57,990
_c00530
PGA1_c00540: PGA1_c00540 - putative 16S rRNA-processing protein RimM, at 57,996 to 58,499
_c00540
PGA1_c00550: PGA1_c00550 - putative cob(II)yrinic acid a,c-diamide reductase, at 58,650 to 59,291
_c00550
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.042 kb on + strand at 56.047 kb on + strand at 56.067 kb on - strand at 56.120 kb on - strand at 56.120 kb on - strand at 56.123 kb on - strand at 56.895 kb on - strand at 56.944 kb on - strand at 56.944 kb on - strand at 56.944 kb on - strand at 56.944 kb on - strand at 56.974 kb on - strand at 56.979 kb on - strand at 56.988 kb on + strand at 57.010 kb on + strand at 57.010 kb on + strand at 57.018 kb on - strand at 57.018 kb on - strand at 57.018 kb on - strand at 57.018 kb on - strand at 57.020 kb on + strand at 57.058 kb on + strand at 57.065 kb on - strand, within PGA1_c00530 at 57.102 kb on - strand, within PGA1_c00530 at 57.108 kb on + strand, within PGA1_c00530 at 57.115 kb on - strand, within PGA1_c00530 at 57.116 kb on - strand, within PGA1_c00530 at 57.128 kb on + strand, within PGA1_c00530 at 57.202 kb on - strand, within PGA1_c00530 at 57.204 kb on + strand, within PGA1_c00530 at 57.212 kb on - strand, within PGA1_c00530 at 57.252 kb on + strand, within PGA1_c00530 at 57.252 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.299 kb on + strand, within PGA1_c00530 at 57.317 kb on + strand, within PGA1_c00530 at 57.330 kb on - strand, within PGA1_c00530 at 57.331 kb on + strand, within PGA1_c00530 at 57.335 kb on - strand, within PGA1_c00530 at 57.341 kb on + strand, within PGA1_c00530 at 57.351 kb on + strand, within PGA1_c00530 at 57.351 kb on + strand, within PGA1_c00530 at 57.361 kb on + strand, within PGA1_c00530 at 57.376 kb on - strand, within PGA1_c00530 at 57.388 kb on - strand, within PGA1_c00530 at 57.423 kb on + strand, within PGA1_c00530 at 57.423 kb on + strand, within PGA1_c00530 at 57.423 kb on + strand, within PGA1_c00530 at 57.426 kb on - strand, within PGA1_c00530 at 57.428 kb on + strand, within PGA1_c00530 at 57.428 kb on + strand, within PGA1_c00530 at 57.431 kb on - strand, within PGA1_c00530 at 57.456 kb on - strand, within PGA1_c00530 at 57.459 kb on + strand, within PGA1_c00530 at 57.460 kb on + strand, within PGA1_c00530 at 57.467 kb on - strand, within PGA1_c00530 at 57.467 kb on - strand, within PGA1_c00530 at 57.480 kb on - strand, within PGA1_c00530 at 57.492 kb on + strand, within PGA1_c00530 at 57.514 kb on - strand, within PGA1_c00530 at 57.515 kb on + strand, within PGA1_c00530 at 57.540 kb on + strand, within PGA1_c00530 at 57.540 kb on + strand, within PGA1_c00530 at 57.540 kb on - strand, within PGA1_c00530 at 57.542 kb on + strand, within PGA1_c00530 at 57.561 kb on + strand, within PGA1_c00530 at 57.561 kb on + strand, within PGA1_c00530 at 57.586 kb on + strand, within PGA1_c00530 at 57.605 kb on + strand, within PGA1_c00530 at 57.613 kb on - strand, within PGA1_c00530 at 57.613 kb on - strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.648 kb on - strand, within PGA1_c00530 at 57.664 kb on - strand, within PGA1_c00530 at 57.737 kb on + strand, within PGA1_c00530 at 57.737 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.806 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.885 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.890 kb on - strand at 57.892 kb on + strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.900 kb on - strand at 57.979 kb on + strand at 57.987 kb on - strand at 57.994 kb on + strand at 58.002 kb on - strand at 58.002 kb on - strand at 58.510 kb on - strand at 58.520 kb on - strand at 58.528 kb on - strand at 58.530 kb on - strand at 58.543 kb on - strand at 58.556 kb on + strand at 58.564 kb on - strand at 58.591 kb on - strand at 58.633 kb on + strand at 58.640 kb on + strand at 58.643 kb on - strand at 58.682 kb on + strand at 58.690 kb on - strand at 58.830 kb on + strand, within PGA1_c00550 at 58.832 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.850 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.880 kb on + strand, within PGA1_c00550 at 58.908 kb on + strand, within PGA1_c00550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 56,042 + +0.7 56,047 + +1.5 56,067 - -2.6 56,120 - -1.3 56,120 - +0.8 56,123 - -0.6 56,895 - -1.5 56,944 - -0.1 56,944 - +0.4 56,944 - -2.5 56,944 - -1.5 56,974 - -0.4 56,979 - +0.3 56,988 + +0.3 57,010 + +0.5 57,010 + +1.5 57,018 - -0.6 57,018 - -0.1 57,018 - +0.7 57,018 - -0.6 57,020 + -3.1 57,058 + +0.6 57,065 - PGA1_c00530 0.10 -1.2 57,102 - PGA1_c00530 0.14 -3.3 57,108 + PGA1_c00530 0.14 -1.5 57,115 - PGA1_c00530 0.15 +0.1 57,116 - PGA1_c00530 0.15 +0.2 57,128 + PGA1_c00530 0.16 -0.3 57,202 - PGA1_c00530 0.23 +0.8 57,204 + PGA1_c00530 0.24 -2.2 57,212 - PGA1_c00530 0.24 +0.1 57,252 + PGA1_c00530 0.28 +0.6 57,252 + PGA1_c00530 0.28 -0.8 57,289 + PGA1_c00530 0.32 +0.6 57,289 + PGA1_c00530 0.32 -0.6 57,289 + PGA1_c00530 0.32 +0.0 57,289 + PGA1_c00530 0.32 -0.0 57,299 + PGA1_c00530 0.33 +0.1 57,317 + PGA1_c00530 0.34 -0.4 57,330 - PGA1_c00530 0.36 -2.0 57,331 + PGA1_c00530 0.36 -0.4 57,335 - PGA1_c00530 0.36 +0.4 57,341 + PGA1_c00530 0.37 +0.1 57,351 + PGA1_c00530 0.38 -2.0 57,351 + PGA1_c00530 0.38 -0.3 57,361 + PGA1_c00530 0.39 +0.0 57,376 - PGA1_c00530 0.40 +1.0 57,388 - PGA1_c00530 0.41 -0.3 57,423 + PGA1_c00530 0.45 -1.1 57,423 + PGA1_c00530 0.45 +0.4 57,423 + PGA1_c00530 0.45 -1.3 57,426 - PGA1_c00530 0.45 -0.5 57,428 + PGA1_c00530 0.45 -1.0 57,428 + PGA1_c00530 0.45 -0.6 57,431 - PGA1_c00530 0.46 +1.1 57,456 - PGA1_c00530 0.48 +1.5 57,459 + PGA1_c00530 0.48 +0.2 57,460 + PGA1_c00530 0.48 +0.9 57,467 - PGA1_c00530 0.49 -1.2 57,467 - PGA1_c00530 0.49 +2.6 57,480 - PGA1_c00530 0.50 +1.0 57,492 + PGA1_c00530 0.52 -0.5 57,514 - PGA1_c00530 0.54 +1.0 57,515 + PGA1_c00530 0.54 +0.0 57,540 + PGA1_c00530 0.56 -1.1 57,540 + PGA1_c00530 0.56 -0.1 57,540 - PGA1_c00530 0.56 +1.7 57,542 + PGA1_c00530 0.56 +0.5 57,561 + PGA1_c00530 0.58 +0.9 57,561 + PGA1_c00530 0.58 -0.2 57,586 + PGA1_c00530 0.61 -1.8 57,605 + PGA1_c00530 0.62 +0.2 57,613 - PGA1_c00530 0.63 +1.5 57,613 - PGA1_c00530 0.63 +1.1 57,640 + PGA1_c00530 0.66 -0.5 57,640 + PGA1_c00530 0.66 +1.2 57,640 + PGA1_c00530 0.66 -2.2 57,640 + PGA1_c00530 0.66 +0.2 57,648 - PGA1_c00530 0.67 -1.6 57,664 - PGA1_c00530 0.68 -1.2 57,737 + PGA1_c00530 0.75 +0.3 57,737 - PGA1_c00530 0.75 -0.6 57,745 - PGA1_c00530 0.76 -0.6 57,745 - PGA1_c00530 0.76 -0.2 57,745 - PGA1_c00530 0.76 -1.1 57,806 + PGA1_c00530 0.82 -0.6 57,816 + PGA1_c00530 0.83 -1.4 57,816 + PGA1_c00530 0.83 -1.9 57,824 - PGA1_c00530 0.84 -1.7 57,824 - PGA1_c00530 0.84 -1.3 57,885 + PGA1_c00530 0.90 +0.2 57,887 + PGA1_c00530 0.90 -0.3 57,887 + PGA1_c00530 0.90 +1.1 57,890 - -2.0 57,892 + +0.1 57,895 - -0.5 57,895 - -0.6 57,895 - +0.5 57,895 - +0.9 57,895 - -0.3 57,895 - -0.4 57,895 - -1.1 57,900 - -1.1 57,979 + -2.9 57,987 - -1.2 57,994 + +0.8 58,002 - -2.3 58,002 - -0.9 58,510 - -0.6 58,520 - -0.8 58,528 - -1.1 58,530 - +0.4 58,543 - -1.9 58,556 + +0.8 58,564 - +0.4 58,591 - -0.4 58,633 + +0.8 58,640 + -0.8 58,643 - -0.7 58,682 + +0.5 58,690 - -0.1 58,830 + PGA1_c00550 0.28 -0.6 58,832 - PGA1_c00550 0.28 -0.3 58,837 - PGA1_c00550 0.29 -0.1 58,837 - PGA1_c00550 0.29 +0.5 58,850 + PGA1_c00550 0.31 +0.2 58,855 + PGA1_c00550 0.32 -1.1 58,855 + PGA1_c00550 0.32 -0.8 58,855 + PGA1_c00550 0.32 -1.2 58,863 - PGA1_c00550 0.33 -0.3 58,863 - PGA1_c00550 0.33 +1.9 58,863 - PGA1_c00550 0.33 +0.7 58,880 + PGA1_c00550 0.36 -0.0 58,908 + PGA1_c00550 0.40 +1.2
Or see this region's nucleotide sequence