Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04820

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04810 and PGA1_c04820 overlap by 4 nucleotidesPGA1_c04820 and PGA1_c04830 are separated by 326 nucleotides PGA1_c04810: PGA1_c04810 - 3-phosphoshikimate 1-carboxyvinyltransferase AroA, at 472,867 to 474,216 _c04810 PGA1_c04820: PGA1_c04820 - cytidylate kinase Cmk, at 474,213 to 474,818 _c04820 PGA1_c04830: PGA1_c04830 - 30S ribosomal protein S1, at 475,145 to 476,824 _c04830 Position (kb) 474 475Strain fitness (log2 ratio) -2 -1 0 1at 474.825 kb on - strandat 474.865 kb on + strandat 474.875 kb on + strandat 474.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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474,825 - +0.1
474,865 + -2.6
474,875 + -0.7
474,926 - +0.1

Or see this region's nucleotide sequence