Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04790 and PGA1_c04800 are separated by 92 nucleotides PGA1_c04800 and PGA1_c04810 are separated by 133 nucleotides PGA1_c04810 and PGA1_c04820 overlap by 4 nucleotides PGA1_c04820 and PGA1_c04830 are separated by 326 nucleotides
PGA1_c04790: PGA1_c04790 - Clp protease., at 471,166 to 471,876
_c04790
PGA1_c04800: PGA1_c04800 - tRNA (guanine-N(7)-)-methyltransferase TrmB, at 471,969 to 472,733
_c04800
PGA1_c04810: PGA1_c04810 - 3-phosphoshikimate 1-carboxyvinyltransferase AroA, at 472,867 to 474,216
_c04810
PGA1_c04820: PGA1_c04820 - cytidylate kinase Cmk, at 474,213 to 474,818
_c04820
PGA1_c04830: PGA1_c04830 - 30S ribosomal protein S1, at 475,145 to 476,824
_c04830
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -2
-1
0
1 at 471.898 kb on + strand at 471.938 kb on + strand at 471.946 kb on - strand at 471.988 kb on - strand at 472.019 kb on - strand at 472.035 kb on + strand at 472.073 kb on + strand, within PGA1_c04800 at 472.081 kb on - strand, within PGA1_c04800 at 472.081 kb on - strand, within PGA1_c04800 at 472.106 kb on + strand, within PGA1_c04800 at 472.161 kb on - strand, within PGA1_c04800 at 472.207 kb on + strand, within PGA1_c04800 at 472.222 kb on - strand, within PGA1_c04800 at 472.225 kb on + strand, within PGA1_c04800 at 472.248 kb on + strand, within PGA1_c04800 at 472.248 kb on + strand, within PGA1_c04800 at 472.294 kb on + strand, within PGA1_c04800 at 472.302 kb on - strand, within PGA1_c04800 at 472.304 kb on - strand, within PGA1_c04800 at 472.310 kb on - strand, within PGA1_c04800 at 472.310 kb on - strand, within PGA1_c04800 at 472.315 kb on + strand, within PGA1_c04800 at 472.361 kb on + strand, within PGA1_c04800 at 472.369 kb on - strand, within PGA1_c04800 at 472.392 kb on - strand, within PGA1_c04800 at 472.405 kb on + strand, within PGA1_c04800 at 472.436 kb on + strand, within PGA1_c04800 at 472.436 kb on + strand, within PGA1_c04800 at 472.441 kb on + strand, within PGA1_c04800 at 472.441 kb on + strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.453 kb on + strand, within PGA1_c04800 at 472.497 kb on + strand, within PGA1_c04800 at 472.683 kb on + strand at 472.727 kb on + strand at 472.727 kb on + strand at 472.727 kb on + strand at 472.746 kb on + strand at 472.746 kb on + strand at 472.749 kb on - strand at 472.754 kb on - strand at 472.754 kb on - strand at 472.754 kb on - strand at 472.763 kb on + strand at 472.763 kb on + strand at 472.771 kb on - strand at 472.771 kb on - strand at 472.771 kb on - strand at 474.825 kb on - strand at 474.865 kb on + strand at 474.875 kb on + strand at 474.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 471,898 + +0.0 471,938 + -0.9 471,946 - -0.7 471,988 - -0.9 472,019 - -0.8 472,035 + -0.8 472,073 + PGA1_c04800 0.14 +1.0 472,081 - PGA1_c04800 0.15 -0.1 472,081 - PGA1_c04800 0.15 -1.0 472,106 + PGA1_c04800 0.18 -0.3 472,161 - PGA1_c04800 0.25 +0.1 472,207 + PGA1_c04800 0.31 -0.4 472,222 - PGA1_c04800 0.33 +1.0 472,225 + PGA1_c04800 0.33 -0.5 472,248 + PGA1_c04800 0.36 -0.3 472,248 + PGA1_c04800 0.36 -0.1 472,294 + PGA1_c04800 0.42 +0.3 472,302 - PGA1_c04800 0.44 +0.3 472,304 - PGA1_c04800 0.44 -0.2 472,310 - PGA1_c04800 0.45 +0.3 472,310 - PGA1_c04800 0.45 -2.0 472,315 + PGA1_c04800 0.45 +0.3 472,361 + PGA1_c04800 0.51 -0.7 472,369 - PGA1_c04800 0.52 -0.0 472,392 - PGA1_c04800 0.55 -0.8 472,405 + PGA1_c04800 0.57 -1.3 472,436 + PGA1_c04800 0.61 +1.0 472,436 + PGA1_c04800 0.61 -2.3 472,441 + PGA1_c04800 0.62 -1.1 472,441 + PGA1_c04800 0.62 +0.6 472,444 - PGA1_c04800 0.62 -0.2 472,444 - PGA1_c04800 0.62 +0.5 472,444 - PGA1_c04800 0.62 -1.1 472,449 - PGA1_c04800 0.63 +0.3 472,449 - PGA1_c04800 0.63 +0.0 472,449 - PGA1_c04800 0.63 +0.7 472,453 + PGA1_c04800 0.63 -0.2 472,497 + PGA1_c04800 0.69 +0.2 472,683 + -0.4 472,727 + +0.2 472,727 + +0.4 472,727 + +1.1 472,746 + +0.0 472,746 + -1.6 472,749 - +0.2 472,754 - -1.4 472,754 - +1.1 472,754 - -0.2 472,763 + -1.0 472,763 + +1.3 472,771 - -0.4 472,771 - -0.1 472,771 - -1.4 474,825 - +0.1 474,865 + -2.6 474,875 + -0.7 474,926 - +0.1
Or see this region's nucleotide sequence