Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04530 and PGA1_c04540 are separated by 140 nucleotides PGA1_c04540 and PGA1_c04550 are separated by 29 nucleotides
PGA1_c04530: PGA1_c04530 - ureidoglycolate lyase, at 445,434 to 446,282
_c04530
PGA1_c04540: PGA1_c04540 - putative d-galactonate dehydratase, at 446,423 to 447,655
_c04540
PGA1_c04550: PGA1_c04550 - putative formaldehyde dehydrogenase, at 447,685 to 448,776
_c04550
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 445.537 kb on + strand, within PGA1_c04530 at 445.542 kb on + strand, within PGA1_c04530 at 445.545 kb on - strand, within PGA1_c04530 at 445.550 kb on - strand, within PGA1_c04530 at 445.550 kb on - strand, within PGA1_c04530 at 445.550 kb on - strand, within PGA1_c04530 at 445.618 kb on + strand, within PGA1_c04530 at 445.662 kb on + strand, within PGA1_c04530 at 445.665 kb on - strand, within PGA1_c04530 at 445.670 kb on - strand, within PGA1_c04530 at 445.804 kb on - strand, within PGA1_c04530 at 445.809 kb on + strand, within PGA1_c04530 at 445.888 kb on - strand, within PGA1_c04530 at 445.890 kb on + strand, within PGA1_c04530 at 445.890 kb on + strand, within PGA1_c04530 at 445.940 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.947 kb on + strand, within PGA1_c04530 at 445.955 kb on - strand, within PGA1_c04530 at 445.963 kb on + strand, within PGA1_c04530 at 446.072 kb on - strand, within PGA1_c04530 at 446.077 kb on + strand, within PGA1_c04530 at 446.128 kb on + strand, within PGA1_c04530 at 446.140 kb on - strand, within PGA1_c04530 at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.203 kb on + strand at 446.211 kb on - strand at 446.211 kb on - strand at 446.211 kb on - strand at 446.211 kb on - strand at 446.221 kb on + strand at 446.303 kb on + strand at 446.311 kb on - strand at 446.332 kb on + strand at 446.341 kb on + strand at 446.367 kb on + strand at 446.411 kb on - strand at 446.424 kb on - strand at 446.434 kb on - strand at 446.514 kb on - strand at 446.514 kb on - strand at 446.550 kb on + strand, within PGA1_c04540 at 446.563 kb on + strand, within PGA1_c04540 at 446.563 kb on + strand, within PGA1_c04540 at 446.571 kb on - strand, within PGA1_c04540 at 446.571 kb on - strand, within PGA1_c04540 at 446.581 kb on - strand, within PGA1_c04540 at 446.604 kb on + strand, within PGA1_c04540 at 446.613 kb on + strand, within PGA1_c04540 at 446.657 kb on - strand, within PGA1_c04540 at 446.672 kb on + strand, within PGA1_c04540 at 446.744 kb on + strand, within PGA1_c04540 at 446.794 kb on - strand, within PGA1_c04540 at 446.958 kb on + strand, within PGA1_c04540 at 446.961 kb on - strand, within PGA1_c04540 at 446.961 kb on - strand, within PGA1_c04540 at 447.038 kb on + strand, within PGA1_c04540 at 447.038 kb on + strand, within PGA1_c04540 at 447.043 kb on + strand, within PGA1_c04540 at 447.061 kb on - strand, within PGA1_c04540 at 447.169 kb on + strand, within PGA1_c04540 at 447.171 kb on + strand, within PGA1_c04540 at 447.171 kb on + strand, within PGA1_c04540 at 447.222 kb on + strand, within PGA1_c04540 at 447.222 kb on - strand, within PGA1_c04540 at 447.222 kb on - strand, within PGA1_c04540 at 447.235 kb on + strand, within PGA1_c04540 at 447.269 kb on + strand, within PGA1_c04540 at 447.326 kb on + strand, within PGA1_c04540 at 447.346 kb on + strand, within PGA1_c04540 at 447.394 kb on + strand, within PGA1_c04540 at 447.394 kb on + strand, within PGA1_c04540 at 447.402 kb on - strand, within PGA1_c04540 at 447.402 kb on - strand, within PGA1_c04540 at 447.430 kb on + strand, within PGA1_c04540 at 447.502 kb on - strand, within PGA1_c04540 at 447.502 kb on - strand, within PGA1_c04540 at 447.531 kb on + strand, within PGA1_c04540 at 447.593 kb on + strand at 447.600 kb on + strand at 447.605 kb on + strand at 447.675 kb on + strand at 447.675 kb on + strand at 447.683 kb on + strand at 447.683 kb on - strand at 447.683 kb on - strand at 447.712 kb on - strand at 447.746 kb on + strand at 447.746 kb on + strand at 447.754 kb on - strand at 447.754 kb on - strand at 447.756 kb on + strand at 447.756 kb on + strand at 447.756 kb on + strand at 447.764 kb on - strand at 447.764 kb on - strand at 447.764 kb on - strand at 447.802 kb on + strand, within PGA1_c04550 at 447.810 kb on + strand, within PGA1_c04550 at 447.815 kb on - strand, within PGA1_c04550 at 447.815 kb on - strand, within PGA1_c04550 at 447.817 kb on + strand, within PGA1_c04550 at 447.843 kb on + strand, within PGA1_c04550 at 447.869 kb on - strand, within PGA1_c04550 at 447.871 kb on + strand, within PGA1_c04550 at 447.877 kb on + strand, within PGA1_c04550 at 447.879 kb on - strand, within PGA1_c04550 at 447.880 kb on - strand, within PGA1_c04550 at 447.914 kb on - strand, within PGA1_c04550 at 447.970 kb on - strand, within PGA1_c04550 at 447.994 kb on + strand, within PGA1_c04550 at 447.994 kb on + strand, within PGA1_c04550 at 448.002 kb on - strand, within PGA1_c04550 at 448.025 kb on + strand, within PGA1_c04550 at 448.054 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.084 kb on + strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.092 kb on - strand, within PGA1_c04550 at 448.183 kb on + strand, within PGA1_c04550 at 448.219 kb on + strand, within PGA1_c04550 at 448.224 kb on + strand, within PGA1_c04550 at 448.248 kb on + strand, within PGA1_c04550 at 448.256 kb on + strand, within PGA1_c04550 at 448.271 kb on - strand, within PGA1_c04550 at 448.294 kb on - strand, within PGA1_c04550 at 448.297 kb on + strand, within PGA1_c04550 at 448.302 kb on - strand, within PGA1_c04550 at 448.382 kb on + strand, within PGA1_c04550 at 448.412 kb on + strand, within PGA1_c04550 at 448.448 kb on - strand, within PGA1_c04550 at 448.521 kb on + strand, within PGA1_c04550 at 448.531 kb on + strand, within PGA1_c04550 at 448.535 kb on - strand, within PGA1_c04550 at 448.541 kb on + strand, within PGA1_c04550 at 448.546 kb on + strand, within PGA1_c04550 at 448.573 kb on + strand, within PGA1_c04550 at 448.607 kb on + strand, within PGA1_c04550 at 448.632 kb on + strand, within PGA1_c04550 at 448.632 kb on + strand, within PGA1_c04550 at 448.640 kb on - strand, within PGA1_c04550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 445,537 + PGA1_c04530 0.12 +0.1 445,542 + PGA1_c04530 0.13 -1.7 445,545 - PGA1_c04530 0.13 +0.7 445,550 - PGA1_c04530 0.14 +0.1 445,550 - PGA1_c04530 0.14 -0.9 445,550 - PGA1_c04530 0.14 +1.1 445,618 + PGA1_c04530 0.22 +1.6 445,662 + PGA1_c04530 0.27 +0.1 445,665 - PGA1_c04530 0.27 +0.6 445,670 - PGA1_c04530 0.28 -0.3 445,804 - PGA1_c04530 0.44 -2.6 445,809 + PGA1_c04530 0.44 -1.8 445,888 - PGA1_c04530 0.53 +0.4 445,890 + PGA1_c04530 0.54 -0.1 445,890 + PGA1_c04530 0.54 -1.0 445,940 + PGA1_c04530 0.60 -1.5 445,947 + PGA1_c04530 0.60 -0.0 445,947 + PGA1_c04530 0.60 -1.4 445,947 + PGA1_c04530 0.60 +0.6 445,947 + PGA1_c04530 0.60 -1.5 445,955 - PGA1_c04530 0.61 +0.4 445,963 + PGA1_c04530 0.62 -0.1 446,072 - PGA1_c04530 0.75 -1.0 446,077 + PGA1_c04530 0.76 -0.6 446,128 + PGA1_c04530 0.82 -1.9 446,140 - PGA1_c04530 0.83 -1.5 446,203 + +0.1 446,203 + +0.1 446,203 + -0.2 446,203 + +0.6 446,203 + +0.4 446,203 + +1.1 446,203 + -0.4 446,211 - +0.7 446,211 - -1.2 446,211 - -1.1 446,211 - +0.5 446,221 + -1.3 446,303 + -0.5 446,311 - +1.5 446,332 + +1.5 446,341 + +0.7 446,367 + +0.1 446,411 - +0.8 446,424 - -2.8 446,434 - -0.5 446,514 - -0.5 446,514 - -1.4 446,550 + PGA1_c04540 0.10 -0.1 446,563 + PGA1_c04540 0.11 -0.4 446,563 + PGA1_c04540 0.11 -0.1 446,571 - PGA1_c04540 0.12 +0.8 446,571 - PGA1_c04540 0.12 +2.1 446,581 - PGA1_c04540 0.13 +0.4 446,604 + PGA1_c04540 0.15 -1.1 446,613 + PGA1_c04540 0.15 -0.6 446,657 - PGA1_c04540 0.19 +0.2 446,672 + PGA1_c04540 0.20 +1.3 446,744 + PGA1_c04540 0.26 -0.5 446,794 - PGA1_c04540 0.30 +0.4 446,958 + PGA1_c04540 0.43 -0.3 446,961 - PGA1_c04540 0.44 +0.2 446,961 - PGA1_c04540 0.44 +1.0 447,038 + PGA1_c04540 0.50 +0.5 447,038 + PGA1_c04540 0.50 -1.6 447,043 + PGA1_c04540 0.50 +0.4 447,061 - PGA1_c04540 0.52 -0.5 447,169 + PGA1_c04540 0.61 -0.5 447,171 + PGA1_c04540 0.61 -0.1 447,171 + PGA1_c04540 0.61 +0.5 447,222 + PGA1_c04540 0.65 -0.5 447,222 - PGA1_c04540 0.65 +0.9 447,222 - PGA1_c04540 0.65 -1.1 447,235 + PGA1_c04540 0.66 -2.0 447,269 + PGA1_c04540 0.69 +0.5 447,326 + PGA1_c04540 0.73 -1.7 447,346 + PGA1_c04540 0.75 +0.1 447,394 + PGA1_c04540 0.79 -0.7 447,394 + PGA1_c04540 0.79 +0.5 447,402 - PGA1_c04540 0.79 -0.0 447,402 - PGA1_c04540 0.79 +0.1 447,430 + PGA1_c04540 0.82 -1.6 447,502 - PGA1_c04540 0.88 -0.3 447,502 - PGA1_c04540 0.88 -1.4 447,531 + PGA1_c04540 0.90 +1.4 447,593 + +0.5 447,600 + +1.9 447,605 + +0.9 447,675 + +0.7 447,675 + +1.1 447,683 + +0.4 447,683 - +1.0 447,683 - +0.5 447,712 - -1.0 447,746 + -1.8 447,746 + +0.4 447,754 - -0.9 447,754 - -1.3 447,756 + -0.5 447,756 + +0.4 447,756 + +2.6 447,764 - +0.0 447,764 - +1.0 447,764 - +2.2 447,802 + PGA1_c04550 0.11 +0.3 447,810 + PGA1_c04550 0.11 -3.4 447,815 - PGA1_c04550 0.12 -0.5 447,815 - PGA1_c04550 0.12 +0.5 447,817 + PGA1_c04550 0.12 +0.1 447,843 + PGA1_c04550 0.14 +1.8 447,869 - PGA1_c04550 0.17 -1.0 447,871 + PGA1_c04550 0.17 +0.0 447,877 + PGA1_c04550 0.18 +0.9 447,879 - PGA1_c04550 0.18 +0.2 447,880 - PGA1_c04550 0.18 +0.6 447,914 - PGA1_c04550 0.21 +0.2 447,970 - PGA1_c04550 0.26 -0.9 447,994 + PGA1_c04550 0.28 -1.3 447,994 + PGA1_c04550 0.28 +1.0 448,002 - PGA1_c04550 0.29 +1.1 448,025 + PGA1_c04550 0.31 -0.9 448,054 + PGA1_c04550 0.34 -2.7 448,084 + PGA1_c04550 0.37 -1.0 448,084 + PGA1_c04550 0.37 +0.5 448,084 + PGA1_c04550 0.37 -1.2 448,084 + PGA1_c04550 0.37 -0.8 448,084 + PGA1_c04550 0.37 -0.7 448,084 + PGA1_c04550 0.37 +0.8 448,084 + PGA1_c04550 0.37 +0.1 448,084 + PGA1_c04550 0.37 -2.0 448,084 + PGA1_c04550 0.37 +0.1 448,084 + PGA1_c04550 0.37 +2.1 448,084 + PGA1_c04550 0.37 -0.7 448,084 + PGA1_c04550 0.37 +1.1 448,084 + PGA1_c04550 0.37 +1.0 448,084 + PGA1_c04550 0.37 +0.2 448,092 - PGA1_c04550 0.37 -1.4 448,092 - PGA1_c04550 0.37 -1.7 448,092 - PGA1_c04550 0.37 -0.0 448,092 - PGA1_c04550 0.37 -0.2 448,092 - PGA1_c04550 0.37 +0.5 448,183 + PGA1_c04550 0.46 +0.7 448,219 + PGA1_c04550 0.49 -2.6 448,224 + PGA1_c04550 0.49 +0.7 448,248 + PGA1_c04550 0.52 +0.0 448,256 + PGA1_c04550 0.52 +0.6 448,271 - PGA1_c04550 0.54 -0.5 448,294 - PGA1_c04550 0.56 -1.9 448,297 + PGA1_c04550 0.56 +0.3 448,302 - PGA1_c04550 0.57 +0.2 448,382 + PGA1_c04550 0.64 -1.6 448,412 + PGA1_c04550 0.67 +0.4 448,448 - PGA1_c04550 0.70 +2.1 448,521 + PGA1_c04550 0.77 +0.0 448,531 + PGA1_c04550 0.77 +0.0 448,535 - PGA1_c04550 0.78 +0.9 448,541 + PGA1_c04550 0.78 -1.8 448,546 + PGA1_c04550 0.79 +0.8 448,573 + PGA1_c04550 0.81 -0.6 448,607 + PGA1_c04550 0.84 +0.1 448,632 + PGA1_c04550 0.87 -0.3 448,632 + PGA1_c04550 0.87 -0.4 448,640 - PGA1_c04550 0.87 +0.5
Or see this region's nucleotide sequence