Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04270 and PGA1_c04280 overlap by 1 nucleotides PGA1_c04280 and PGA1_c04290 are separated by 9 nucleotides PGA1_c04290 and PGA1_c04300 are separated by 23 nucleotides
PGA1_c04270: PGA1_c04270 - protein PhnJ, at 413,842 to 414,699
_c04270
PGA1_c04280: PGA1_c04280 - phosphonates transport ATP-binding protein PhnK, at 414,699 to 415,469
_c04280
PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162
_c04290
PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731
_c04300
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 413.710 kb on + strand at 413.725 kb on + strand at 413.730 kb on + strand at 413.733 kb on - strand at 413.777 kb on - strand at 413.777 kb on - strand at 413.848 kb on + strand at 413.920 kb on - strand at 413.965 kb on + strand, within PGA1_c04270 at 413.984 kb on - strand, within PGA1_c04270 at 413.987 kb on + strand, within PGA1_c04270 at 413.997 kb on - strand, within PGA1_c04270 at 414.002 kb on - strand, within PGA1_c04270 at 414.002 kb on - strand, within PGA1_c04270 at 414.059 kb on + strand, within PGA1_c04270 at 414.059 kb on + strand, within PGA1_c04270 at 414.060 kb on - strand, within PGA1_c04270 at 414.096 kb on + strand, within PGA1_c04270 at 414.137 kb on + strand, within PGA1_c04270 at 414.150 kb on - strand, within PGA1_c04270 at 414.186 kb on + strand, within PGA1_c04270 at 414.228 kb on - strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.331 kb on + strand, within PGA1_c04270 at 414.347 kb on - strand, within PGA1_c04270 at 414.411 kb on + strand, within PGA1_c04270 at 414.441 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.473 kb on - strand, within PGA1_c04270 at 414.473 kb on - strand, within PGA1_c04270 at 414.488 kb on - strand, within PGA1_c04270 at 414.531 kb on + strand, within PGA1_c04270 at 414.531 kb on + strand, within PGA1_c04270 at 414.544 kb on - strand, within PGA1_c04270 at 414.544 kb on - strand, within PGA1_c04270 at 414.573 kb on - strand, within PGA1_c04270 at 414.576 kb on - strand, within PGA1_c04270 at 414.734 kb on + strand at 414.734 kb on + strand at 414.734 kb on + strand at 414.734 kb on + strand at 414.742 kb on - strand at 414.757 kb on + strand at 414.762 kb on + strand at 414.762 kb on + strand at 414.762 kb on + strand at 414.765 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.792 kb on + strand, within PGA1_c04280 at 414.836 kb on + strand, within PGA1_c04280 at 414.841 kb on + strand, within PGA1_c04280 at 414.842 kb on - strand, within PGA1_c04280 at 414.844 kb on + strand, within PGA1_c04280 at 414.844 kb on + strand, within PGA1_c04280 at 414.850 kb on - strand, within PGA1_c04280 at 414.926 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.045 kb on - strand, within PGA1_c04280 at 415.078 kb on - strand, within PGA1_c04280 at 415.093 kb on + strand, within PGA1_c04280 at 415.093 kb on + strand, within PGA1_c04280 at 415.101 kb on - strand, within PGA1_c04280 at 415.218 kb on + strand, within PGA1_c04280 at 415.242 kb on - strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.299 kb on - strand, within PGA1_c04280 at 415.387 kb on + strand, within PGA1_c04280 at 415.400 kb on - strand at 415.435 kb on - strand at 415.463 kb on + strand at 415.507 kb on + strand at 415.507 kb on + strand at 415.520 kb on - strand at 415.592 kb on + strand, within PGA1_c04290 at 415.600 kb on - strand, within PGA1_c04290 at 415.679 kb on - strand, within PGA1_c04290 at 415.692 kb on - strand, within PGA1_c04290 at 415.699 kb on + strand, within PGA1_c04290 at 415.767 kb on + strand, within PGA1_c04290 at 415.778 kb on - strand, within PGA1_c04290 at 415.816 kb on - strand, within PGA1_c04290 at 415.852 kb on + strand, within PGA1_c04290 at 415.860 kb on - strand, within PGA1_c04290 at 415.869 kb on + strand, within PGA1_c04290 at 416.002 kb on + strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.062 kb on + strand, within PGA1_c04290 at 416.108 kb on + strand at 416.108 kb on + strand at 416.108 kb on + strand at 416.186 kb on - strand at 416.238 kb on + strand at 416.242 kb on + strand, within PGA1_c04300 at 416.248 kb on - strand, within PGA1_c04300 at 416.304 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.364 kb on + strand, within PGA1_c04300 at 416.372 kb on - strand, within PGA1_c04300 at 416.382 kb on - strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.392 kb on - strand, within PGA1_c04300 at 416.398 kb on - strand, within PGA1_c04300 at 416.442 kb on + strand, within PGA1_c04300 at 416.445 kb on - strand, within PGA1_c04300
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 413,710 + +0.7 413,725 + +0.7 413,730 + -1.2 413,733 - +0.4 413,777 - -0.2 413,777 - +0.8 413,848 + +0.9 413,920 - +1.7 413,965 + PGA1_c04270 0.14 +0.2 413,984 - PGA1_c04270 0.17 -0.1 413,987 + PGA1_c04270 0.17 +0.9 413,997 - PGA1_c04270 0.18 -1.0 414,002 - PGA1_c04270 0.19 -1.0 414,002 - PGA1_c04270 0.19 -1.6 414,059 + PGA1_c04270 0.25 +1.1 414,059 + PGA1_c04270 0.25 +0.5 414,060 - PGA1_c04270 0.25 -1.3 414,096 + PGA1_c04270 0.30 +1.1 414,137 + PGA1_c04270 0.34 +2.6 414,150 - PGA1_c04270 0.36 +0.4 414,186 + PGA1_c04270 0.40 +0.7 414,228 - PGA1_c04270 0.45 +0.9 414,230 + PGA1_c04270 0.45 +0.3 414,230 + PGA1_c04270 0.45 +0.7 414,230 + PGA1_c04270 0.45 -0.1 414,230 + PGA1_c04270 0.45 -1.3 414,230 + PGA1_c04270 0.45 -1.9 414,230 + PGA1_c04270 0.45 +1.6 414,230 + PGA1_c04270 0.45 +1.2 414,230 + PGA1_c04270 0.45 +0.4 414,230 + PGA1_c04270 0.45 +0.6 414,230 + PGA1_c04270 0.45 +1.4 414,230 + PGA1_c04270 0.45 +0.6 414,230 + PGA1_c04270 0.45 +1.1 414,230 + PGA1_c04270 0.45 -0.6 414,230 + PGA1_c04270 0.45 +1.7 414,230 + PGA1_c04270 0.45 +0.8 414,230 + PGA1_c04270 0.45 -0.1 414,230 + PGA1_c04270 0.45 -0.9 414,230 + PGA1_c04270 0.45 -0.2 414,238 - PGA1_c04270 0.46 +0.1 414,238 - PGA1_c04270 0.46 -1.1 414,238 - PGA1_c04270 0.46 +0.6 414,238 - PGA1_c04270 0.46 -1.1 414,238 - PGA1_c04270 0.46 +0.8 414,238 - PGA1_c04270 0.46 -2.3 414,238 - PGA1_c04270 0.46 -0.3 414,238 - PGA1_c04270 0.46 +0.7 414,238 - PGA1_c04270 0.46 +0.1 414,238 - PGA1_c04270 0.46 -0.5 414,238 - PGA1_c04270 0.46 -2.0 414,238 - PGA1_c04270 0.46 -0.9 414,238 - PGA1_c04270 0.46 +0.4 414,238 - PGA1_c04270 0.46 +1.3 414,331 + PGA1_c04270 0.57 +0.1 414,347 - PGA1_c04270 0.59 +0.3 414,411 + PGA1_c04270 0.66 +0.8 414,441 + PGA1_c04270 0.70 -0.5 414,452 + PGA1_c04270 0.71 -0.4 414,452 + PGA1_c04270 0.71 +0.1 414,452 + PGA1_c04270 0.71 -0.9 414,460 - PGA1_c04270 0.72 +1.1 414,460 - PGA1_c04270 0.72 -0.3 414,460 - PGA1_c04270 0.72 -3.3 414,473 - PGA1_c04270 0.74 -0.0 414,473 - PGA1_c04270 0.74 +0.4 414,488 - PGA1_c04270 0.75 +0.9 414,531 + PGA1_c04270 0.80 -0.0 414,531 + PGA1_c04270 0.80 +0.1 414,544 - PGA1_c04270 0.82 +1.1 414,544 - PGA1_c04270 0.82 -0.7 414,573 - PGA1_c04270 0.85 +1.4 414,576 - PGA1_c04270 0.86 -0.6 414,734 + -1.2 414,734 + +0.8 414,734 + -0.1 414,734 + -1.2 414,742 - -0.0 414,757 + +0.1 414,762 + -0.9 414,762 + -0.9 414,762 + +0.9 414,765 - -0.6 414,770 - +1.6 414,770 - +0.9 414,770 - -0.6 414,770 - +0.1 414,770 - +0.9 414,770 - -0.7 414,770 - -0.0 414,770 - +0.1 414,792 + PGA1_c04280 0.12 -2.4 414,836 + PGA1_c04280 0.18 -2.4 414,841 + PGA1_c04280 0.18 +0.2 414,842 - PGA1_c04280 0.19 -0.7 414,844 + PGA1_c04280 0.19 -1.0 414,844 + PGA1_c04280 0.19 -1.2 414,850 - PGA1_c04280 0.20 -0.8 414,926 + PGA1_c04280 0.29 +0.5 414,960 + PGA1_c04280 0.34 +0.8 414,960 + PGA1_c04280 0.34 +0.2 414,960 + PGA1_c04280 0.34 -1.0 415,037 + PGA1_c04280 0.44 +0.2 415,037 + PGA1_c04280 0.44 -3.1 415,037 + PGA1_c04280 0.44 -0.2 415,045 - PGA1_c04280 0.45 -0.5 415,078 - PGA1_c04280 0.49 -0.3 415,093 + PGA1_c04280 0.51 -0.9 415,093 + PGA1_c04280 0.51 -0.3 415,101 - PGA1_c04280 0.52 -0.2 415,218 + PGA1_c04280 0.67 +1.6 415,242 - PGA1_c04280 0.70 -1.0 415,291 + PGA1_c04280 0.77 -0.4 415,291 + PGA1_c04280 0.77 +1.3 415,299 - PGA1_c04280 0.78 -1.4 415,387 + PGA1_c04280 0.89 -0.2 415,400 - +0.1 415,435 - -1.2 415,463 + -0.5 415,507 + -0.9 415,507 + -0.4 415,520 - -0.6 415,592 + PGA1_c04290 0.17 +0.3 415,600 - PGA1_c04290 0.18 -0.9 415,679 - PGA1_c04290 0.29 -1.7 415,692 - PGA1_c04290 0.31 -0.1 415,699 + PGA1_c04290 0.32 +0.8 415,767 + PGA1_c04290 0.42 +0.3 415,778 - PGA1_c04290 0.44 -0.9 415,816 - PGA1_c04290 0.49 -0.4 415,852 + PGA1_c04290 0.55 +1.0 415,860 - PGA1_c04290 0.56 +0.4 415,869 + PGA1_c04290 0.57 -1.7 416,002 + PGA1_c04290 0.76 -0.8 416,036 - PGA1_c04290 0.81 +0.1 416,036 - PGA1_c04290 0.81 -0.5 416,062 + PGA1_c04290 0.85 -0.7 416,108 + -1.4 416,108 + +1.7 416,108 + +3.1 416,186 - +1.6 416,238 + -0.2 416,242 + PGA1_c04300 0.10 -1.0 416,248 - PGA1_c04300 0.11 -0.2 416,304 + PGA1_c04300 0.22 +0.1 416,347 + PGA1_c04300 0.29 -1.0 416,347 + PGA1_c04300 0.29 +0.3 416,355 - PGA1_c04300 0.31 -1.0 416,355 - PGA1_c04300 0.31 -1.3 416,364 + PGA1_c04300 0.33 -0.9 416,372 - PGA1_c04300 0.34 +0.2 416,382 - PGA1_c04300 0.36 -2.9 416,384 + PGA1_c04300 0.36 +0.5 416,384 + PGA1_c04300 0.36 +0.1 416,384 + PGA1_c04300 0.36 +1.1 416,384 + PGA1_c04300 0.36 +0.2 416,384 + PGA1_c04300 0.36 +1.8 416,390 + PGA1_c04300 0.37 -1.9 416,390 + PGA1_c04300 0.37 +2.6 416,390 + PGA1_c04300 0.37 -2.3 416,390 + PGA1_c04300 0.37 -0.3 416,390 + PGA1_c04300 0.37 -0.3 416,392 - PGA1_c04300 0.38 -2.3 416,398 - PGA1_c04300 0.39 -1.2 416,442 + PGA1_c04300 0.47 +0.7 416,445 - PGA1_c04300 0.47 +0.7
Or see this region's nucleotide sequence