Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00370 and PGA1_c00380 are separated by 44 nucleotides PGA1_c00380 and PGA1_c00390 are separated by 51 nucleotides PGA1_c00390 and PGA1_c00400 overlap by 4 nucleotides PGA1_c00400 and PGA1_c00410 overlap by 4 nucleotides
PGA1_c00370: PGA1_c00370 - putative nnrU protein, at 42,536 to 43,231
_c00370
PGA1_c00380: PGA1_c00380 - putative maleylacetoacetate isomerase, at 43,276 to 43,962
_c00380
PGA1_c00390: PGA1_c00390 - glyoxalase-like protein, at 44,014 to 44,556
_c00390
PGA1_c00400: PGA1_c00400 - Protein of unknown function (DUF2783)., at 44,553 to 44,783
_c00400
PGA1_c00410: PGA1_c00410 - 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase MhpA, at 44,780 to 46,486
_c00410
Position (kb) 44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.033 kb on + strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.041 kb on - strand, within PGA1_c00370 at 43.098 kb on - strand, within PGA1_c00370 at 43.099 kb on - strand, within PGA1_c00370 at 43.213 kb on - strand at 43.249 kb on + strand at 43.267 kb on - strand at 43.306 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.357 kb on + strand, within PGA1_c00380 at 43.370 kb on - strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.405 kb on + strand, within PGA1_c00380 at 43.415 kb on + strand, within PGA1_c00380 at 43.418 kb on + strand, within PGA1_c00380 at 43.439 kb on - strand, within PGA1_c00380 at 43.452 kb on + strand, within PGA1_c00380 at 43.458 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.507 kb on + strand, within PGA1_c00380 at 43.507 kb on + strand, within PGA1_c00380 at 43.513 kb on - strand, within PGA1_c00380 at 43.528 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.600 kb on - strand, within PGA1_c00380 at 43.658 kb on + strand, within PGA1_c00380 at 43.666 kb on - strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.697 kb on + strand, within PGA1_c00380 at 43.734 kb on + strand, within PGA1_c00380 at 43.744 kb on + strand, within PGA1_c00380 at 43.752 kb on - strand, within PGA1_c00380 at 43.754 kb on + strand, within PGA1_c00380 at 43.770 kb on + strand, within PGA1_c00380 at 43.786 kb on + strand, within PGA1_c00380 at 43.803 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.827 kb on + strand, within PGA1_c00380 at 43.835 kb on - strand, within PGA1_c00380 at 43.837 kb on + strand, within PGA1_c00380 at 43.840 kb on - strand, within PGA1_c00380 at 43.842 kb on + strand, within PGA1_c00380 at 43.847 kb on + strand, within PGA1_c00380 at 43.894 kb on + strand at 43.902 kb on - strand at 43.904 kb on + strand at 43.919 kb on - strand at 43.986 kb on + strand at 43.999 kb on + strand at 43.999 kb on + strand at 44.002 kb on - strand at 44.007 kb on - strand at 44.013 kb on + strand at 44.019 kb on - strand at 44.044 kb on - strand at 44.066 kb on + strand at 44.073 kb on + strand, within PGA1_c00390 at 44.127 kb on - strand, within PGA1_c00390 at 44.150 kb on - strand, within PGA1_c00390 at 44.165 kb on - strand, within PGA1_c00390 at 44.171 kb on - strand, within PGA1_c00390 at 44.173 kb on - strand, within PGA1_c00390 at 44.229 kb on + strand, within PGA1_c00390 at 44.229 kb on + strand, within PGA1_c00390 at 44.237 kb on - strand, within PGA1_c00390 at 44.237 kb on - strand, within PGA1_c00390 at 44.237 kb on - strand, within PGA1_c00390 at 44.237 kb on - strand, within PGA1_c00390 at 44.237 kb on - strand, within PGA1_c00390 at 44.237 kb on - strand, within PGA1_c00390 at 44.281 kb on - strand, within PGA1_c00390 at 44.297 kb on - strand, within PGA1_c00390 at 44.313 kb on + strand, within PGA1_c00390 at 44.358 kb on + strand, within PGA1_c00390 at 44.358 kb on + strand, within PGA1_c00390 at 44.366 kb on - strand, within PGA1_c00390 at 44.366 kb on - strand, within PGA1_c00390 at 44.366 kb on - strand, within PGA1_c00390 at 44.368 kb on + strand, within PGA1_c00390 at 44.376 kb on - strand, within PGA1_c00390 at 44.415 kb on + strand, within PGA1_c00390 at 44.427 kb on + strand, within PGA1_c00390 at 44.429 kb on + strand, within PGA1_c00390 at 44.429 kb on + strand, within PGA1_c00390 at 44.435 kb on - strand, within PGA1_c00390 at 44.437 kb on + strand, within PGA1_c00390 at 44.478 kb on + strand, within PGA1_c00390 at 44.491 kb on + strand, within PGA1_c00390 at 44.582 kb on + strand, within PGA1_c00400 at 44.594 kb on + strand, within PGA1_c00400 at 44.609 kb on - strand, within PGA1_c00400 at 44.688 kb on + strand, within PGA1_c00400 at 44.688 kb on + strand, within PGA1_c00400 at 44.694 kb on - strand, within PGA1_c00400 at 44.696 kb on - strand, within PGA1_c00400 at 44.696 kb on - strand, within PGA1_c00400 at 44.718 kb on - strand, within PGA1_c00400 at 44.767 kb on + strand at 44.792 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.810 kb on + strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.818 kb on - strand at 44.867 kb on - strand at 44.867 kb on - strand at 44.869 kb on + strand at 44.879 kb on + strand at 44.882 kb on - strand at 44.892 kb on + strand at 44.926 kb on + strand at 44.926 kb on + strand at 44.928 kb on + strand at 44.936 kb on - strand at 44.936 kb on - strand at 44.994 kb on - strand, within PGA1_c00410 at 45.052 kb on + strand, within PGA1_c00410 at 45.087 kb on + strand, within PGA1_c00410 at 45.089 kb on - strand, within PGA1_c00410 at 45.090 kb on - strand, within PGA1_c00410 at 45.096 kb on + strand, within PGA1_c00410 at 45.106 kb on + strand, within PGA1_c00410 at 45.109 kb on - strand, within PGA1_c00410 at 45.109 kb on - strand, within PGA1_c00410 at 45.111 kb on + strand, within PGA1_c00410 at 45.127 kb on - strand, within PGA1_c00410 at 45.155 kb on + strand, within PGA1_c00410 at 45.156 kb on + strand, within PGA1_c00410 at 45.156 kb on - strand, within PGA1_c00410 at 45.156 kb on - strand, within PGA1_c00410 at 45.156 kb on - strand, within PGA1_c00410 at 45.175 kb on + strand, within PGA1_c00410 at 45.188 kb on - strand, within PGA1_c00410 at 45.196 kb on + strand, within PGA1_c00410 at 45.196 kb on + strand, within PGA1_c00410 at 45.203 kb on + strand, within PGA1_c00410 at 45.221 kb on + strand, within PGA1_c00410 at 45.244 kb on - strand, within PGA1_c00410 at 45.315 kb on + strand, within PGA1_c00410 at 45.320 kb on - strand, within PGA1_c00410 at 45.363 kb on + strand, within PGA1_c00410 at 45.397 kb on + strand, within PGA1_c00410 at 45.397 kb on + strand, within PGA1_c00410 at 45.402 kb on + strand, within PGA1_c00410 at 45.405 kb on - strand, within PGA1_c00410 at 45.449 kb on + strand, within PGA1_c00410 at 45.457 kb on - strand, within PGA1_c00410 at 45.514 kb on + strand, within PGA1_c00410 at 45.527 kb on + strand, within PGA1_c00410 at 45.529 kb on - strand, within PGA1_c00410 at 45.530 kb on - strand, within PGA1_c00410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 43,033 + PGA1_c00370 0.71 -1.3 43,033 + PGA1_c00370 0.71 -3.1 43,041 - PGA1_c00370 0.73 -0.8 43,098 - PGA1_c00370 0.81 +0.1 43,099 - PGA1_c00370 0.81 +2.8 43,213 - -0.1 43,249 + +0.6 43,267 - -0.4 43,306 + -0.6 43,316 + -3.3 43,316 + +0.5 43,316 + -0.2 43,357 + PGA1_c00380 0.12 +1.1 43,370 - PGA1_c00380 0.14 -0.0 43,401 + PGA1_c00380 0.18 -0.4 43,401 + PGA1_c00380 0.18 -1.3 43,405 + PGA1_c00380 0.19 -1.1 43,415 + PGA1_c00380 0.20 -1.0 43,418 + PGA1_c00380 0.21 +0.0 43,439 - PGA1_c00380 0.24 +0.1 43,452 + PGA1_c00380 0.26 -0.1 43,458 + PGA1_c00380 0.26 +0.2 43,469 + PGA1_c00380 0.28 -0.8 43,469 + PGA1_c00380 0.28 +0.0 43,469 + PGA1_c00380 0.28 -0.9 43,477 - PGA1_c00380 0.29 +1.5 43,477 - PGA1_c00380 0.29 +0.6 43,507 + PGA1_c00380 0.34 -0.2 43,507 + PGA1_c00380 0.34 -1.0 43,513 - PGA1_c00380 0.34 -0.9 43,528 - PGA1_c00380 0.37 -0.9 43,585 - PGA1_c00380 0.45 +1.5 43,585 - PGA1_c00380 0.45 -0.3 43,585 - PGA1_c00380 0.45 -2.8 43,600 - PGA1_c00380 0.47 -2.1 43,658 + PGA1_c00380 0.56 -0.9 43,666 - PGA1_c00380 0.57 -0.8 43,695 + PGA1_c00380 0.61 -0.1 43,695 + PGA1_c00380 0.61 -0.9 43,695 + PGA1_c00380 0.61 +0.5 43,695 + PGA1_c00380 0.61 +0.7 43,697 + PGA1_c00380 0.61 -0.8 43,734 + PGA1_c00380 0.67 -2.5 43,744 + PGA1_c00380 0.68 -0.6 43,752 - PGA1_c00380 0.69 -0.0 43,754 + PGA1_c00380 0.70 +1.1 43,770 + PGA1_c00380 0.72 -1.1 43,786 + PGA1_c00380 0.74 -0.6 43,803 + PGA1_c00380 0.77 +0.9 43,804 + PGA1_c00380 0.77 +0.4 43,804 + PGA1_c00380 0.77 -0.8 43,804 + PGA1_c00380 0.77 +0.4 43,827 + PGA1_c00380 0.80 -1.8 43,835 - PGA1_c00380 0.81 +0.5 43,837 + PGA1_c00380 0.82 +0.4 43,840 - PGA1_c00380 0.82 -0.4 43,842 + PGA1_c00380 0.82 -0.8 43,847 + PGA1_c00380 0.83 -2.1 43,894 + -0.6 43,902 - +0.8 43,904 + -0.1 43,919 - +0.2 43,986 + -2.2 43,999 + -1.0 43,999 + +0.9 44,002 - -0.6 44,007 - +1.7 44,013 + -1.3 44,019 - -0.1 44,044 - -0.2 44,066 + +0.7 44,073 + PGA1_c00390 0.11 -1.3 44,127 - PGA1_c00390 0.21 -0.3 44,150 - PGA1_c00390 0.25 -1.8 44,165 - PGA1_c00390 0.28 +0.5 44,171 - PGA1_c00390 0.29 -1.2 44,173 - PGA1_c00390 0.29 -0.6 44,229 + PGA1_c00390 0.40 -0.5 44,229 + PGA1_c00390 0.40 -1.7 44,237 - PGA1_c00390 0.41 +0.2 44,237 - PGA1_c00390 0.41 +1.8 44,237 - PGA1_c00390 0.41 -0.2 44,237 - PGA1_c00390 0.41 -0.5 44,237 - PGA1_c00390 0.41 -2.1 44,237 - PGA1_c00390 0.41 +0.7 44,281 - PGA1_c00390 0.49 +1.8 44,297 - PGA1_c00390 0.52 +0.5 44,313 + PGA1_c00390 0.55 -0.7 44,358 + PGA1_c00390 0.63 -1.2 44,358 + PGA1_c00390 0.63 -1.1 44,366 - PGA1_c00390 0.65 -0.0 44,366 - PGA1_c00390 0.65 -1.5 44,366 - PGA1_c00390 0.65 -0.8 44,368 + PGA1_c00390 0.65 -2.1 44,376 - PGA1_c00390 0.67 -0.6 44,415 + PGA1_c00390 0.74 -0.5 44,427 + PGA1_c00390 0.76 -2.0 44,429 + PGA1_c00390 0.76 +0.2 44,429 + PGA1_c00390 0.76 -1.1 44,435 - PGA1_c00390 0.78 +0.7 44,437 + PGA1_c00390 0.78 -0.5 44,478 + PGA1_c00390 0.85 +1.0 44,491 + PGA1_c00390 0.88 -0.3 44,582 + PGA1_c00400 0.13 -2.4 44,594 + PGA1_c00400 0.18 -0.6 44,609 - PGA1_c00400 0.24 +1.1 44,688 + PGA1_c00400 0.58 -0.8 44,688 + PGA1_c00400 0.58 -0.6 44,694 - PGA1_c00400 0.61 +0.2 44,696 - PGA1_c00400 0.62 -0.6 44,696 - PGA1_c00400 0.62 -0.1 44,718 - PGA1_c00400 0.71 -0.9 44,767 + -0.3 44,792 + +0.6 44,810 + -0.8 44,810 + +0.3 44,810 + -0.7 44,810 + +1.7 44,810 + -0.1 44,810 + -0.5 44,810 + +1.6 44,810 + -2.5 44,810 + +0.3 44,810 + -0.8 44,810 + -0.6 44,810 + +0.1 44,810 + +1.1 44,810 + +1.2 44,810 + +1.1 44,810 + +1.2 44,810 + -1.2 44,810 + +0.3 44,810 + -0.1 44,810 + -0.6 44,810 + -0.4 44,810 + -0.7 44,818 - -0.8 44,818 - -0.5 44,818 - -1.8 44,818 - -0.5 44,818 - -0.8 44,818 - -0.7 44,818 - -0.2 44,818 - -0.8 44,818 - -1.5 44,818 - -0.8 44,818 - +0.4 44,818 - +1.7 44,818 - +0.7 44,818 - -1.4 44,818 - +1.4 44,818 - -1.9 44,818 - -0.3 44,818 - +0.0 44,818 - -0.2 44,818 - -0.6 44,867 - +0.2 44,867 - -0.2 44,869 + -0.4 44,879 + +0.8 44,882 - +0.2 44,892 + -1.9 44,926 + +0.9 44,926 + -0.1 44,928 + +0.4 44,936 - +0.7 44,936 - +1.2 44,994 - PGA1_c00410 0.13 -0.6 45,052 + PGA1_c00410 0.16 -1.3 45,087 + PGA1_c00410 0.18 -0.1 45,089 - PGA1_c00410 0.18 -0.5 45,090 - PGA1_c00410 0.18 -0.4 45,096 + PGA1_c00410 0.19 -0.2 45,106 + PGA1_c00410 0.19 -1.0 45,109 - PGA1_c00410 0.19 -1.1 45,109 - PGA1_c00410 0.19 +0.2 45,111 + PGA1_c00410 0.19 -1.5 45,127 - PGA1_c00410 0.20 +0.9 45,155 + PGA1_c00410 0.22 +0.9 45,156 + PGA1_c00410 0.22 +1.9 45,156 - PGA1_c00410 0.22 +0.3 45,156 - PGA1_c00410 0.22 -0.2 45,156 - PGA1_c00410 0.22 -0.3 45,175 + PGA1_c00410 0.23 -0.4 45,188 - PGA1_c00410 0.24 +0.8 45,196 + PGA1_c00410 0.24 +0.0 45,196 + PGA1_c00410 0.24 +0.3 45,203 + PGA1_c00410 0.25 -1.6 45,221 + PGA1_c00410 0.26 -2.2 45,244 - PGA1_c00410 0.27 +0.5 45,315 + PGA1_c00410 0.31 +1.3 45,320 - PGA1_c00410 0.32 +0.7 45,363 + PGA1_c00410 0.34 -0.9 45,397 + PGA1_c00410 0.36 -1.9 45,397 + PGA1_c00410 0.36 -0.3 45,402 + PGA1_c00410 0.36 -0.6 45,405 - PGA1_c00410 0.37 -1.1 45,449 + PGA1_c00410 0.39 +0.7 45,457 - PGA1_c00410 0.40 -0.5 45,514 + PGA1_c00410 0.43 +0.6 45,527 + PGA1_c00410 0.44 +1.0 45,529 - PGA1_c00410 0.44 -2.7 45,530 - PGA1_c00410 0.44 +1.3
Or see this region's nucleotide sequence