Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03910

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03900 and PGA1_c03910 overlap by 4 nucleotidesPGA1_c03910 and PGA1_c03920 are separated by 95 nucleotidesPGA1_c03920 and PGA1_c03930 are separated by 1 nucleotides PGA1_c03900: PGA1_c03900 - hypothetical protein, at 376,259 to 377,797 _c03900 PGA1_c03910: PGA1_c03910 - short chain dehydrogenase / reductase, at 377,794 to 378,552 _c03910 PGA1_c03920: PGA1_c03920 - Putative transmembrane protein (Alph_Pro_TM)., at 378,648 to 379,538 _c03920 PGA1_c03930: PGA1_c03930 - Predicted permeases, at 379,540 to 380,463 _c03930 Position (kb) 377 378 379Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 377.040 kb on + strand, within PGA1_c03900at 377.122 kb on + strand, within PGA1_c03900at 377.123 kb on + strand, within PGA1_c03900at 377.176 kb on - strand, within PGA1_c03900at 377.203 kb on + strand, within PGA1_c03900at 377.234 kb on + strand, within PGA1_c03900at 377.261 kb on + strand, within PGA1_c03900at 377.261 kb on + strand, within PGA1_c03900at 377.268 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.366 kb on - strand, within PGA1_c03900at 377.415 kb on + strand, within PGA1_c03900at 377.415 kb on + strand, within PGA1_c03900at 377.517 kb on + strand, within PGA1_c03900at 377.529 kb on + strand, within PGA1_c03900at 377.547 kb on - strand, within PGA1_c03900at 377.554 kb on - strand, within PGA1_c03900at 377.554 kb on - strand, within PGA1_c03900at 377.619 kb on - strand, within PGA1_c03900at 377.665 kb on + strandat 377.675 kb on + strandat 377.683 kb on - strandat 377.726 kb on - strandat 377.747 kb on + strandat 377.747 kb on + strandat 377.755 kb on - strandat 377.767 kb on - strandat 377.767 kb on - strandat 377.798 kb on + strandat 377.813 kb on - strandat 377.835 kb on - strandat 377.918 kb on + strand, within PGA1_c03910at 377.926 kb on - strand, within PGA1_c03910at 377.927 kb on + strand, within PGA1_c03910at 377.935 kb on - strand, within PGA1_c03910at 377.959 kb on + strand, within PGA1_c03910at 377.988 kb on + strand, within PGA1_c03910at 377.988 kb on + strand, within PGA1_c03910at 377.988 kb on + strand, within PGA1_c03910at 377.996 kb on - strand, within PGA1_c03910at 378.001 kb on + strand, within PGA1_c03910at 378.037 kb on - strand, within PGA1_c03910at 378.086 kb on + strand, within PGA1_c03910at 378.210 kb on - strand, within PGA1_c03910at 378.254 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.306 kb on + strand, within PGA1_c03910at 378.316 kb on - strand, within PGA1_c03910at 378.399 kb on + strand, within PGA1_c03910at 378.399 kb on + strand, within PGA1_c03910at 378.399 kb on + strand, within PGA1_c03910at 378.407 kb on - strand, within PGA1_c03910at 378.407 kb on - strand, within PGA1_c03910at 378.407 kb on - strand, within PGA1_c03910at 378.427 kb on + strand, within PGA1_c03910at 378.452 kb on - strand, within PGA1_c03910at 378.481 kb on - strandat 378.626 kb on + strandat 378.644 kb on - strandat 378.725 kb on - strandat 378.773 kb on + strand, within PGA1_c03920at 378.773 kb on + strand, within PGA1_c03920at 378.933 kb on - strand, within PGA1_c03920at 379.089 kb on - strand, within PGA1_c03920at 379.144 kb on - strand, within PGA1_c03920at 379.157 kb on + strand, within PGA1_c03920at 379.237 kb on + strand, within PGA1_c03920at 379.482 kb on + strandat 379.482 kb on + strandat 379.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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377,040 + PGA1_c03900 0.51 -2.0
377,122 + PGA1_c03900 0.56 -1.9
377,123 + PGA1_c03900 0.56 -0.1
377,176 - PGA1_c03900 0.60 -0.4
377,203 + PGA1_c03900 0.61 -1.7
377,234 + PGA1_c03900 0.63 -2.9
377,261 + PGA1_c03900 0.65 -2.6
377,261 + PGA1_c03900 0.65 -1.4
377,268 + PGA1_c03900 0.66 -2.6
377,335 + PGA1_c03900 0.70 -1.1
377,335 + PGA1_c03900 0.70 -1.2
377,335 + PGA1_c03900 0.70 -0.9
377,335 + PGA1_c03900 0.70 -2.7
377,335 + PGA1_c03900 0.70 -3.8
377,343 - PGA1_c03900 0.70 -0.6
377,343 - PGA1_c03900 0.70 -2.6
377,343 - PGA1_c03900 0.70 -0.3
377,343 - PGA1_c03900 0.70 -2.4
377,343 - PGA1_c03900 0.70 +0.1
377,366 - PGA1_c03900 0.72 -2.2
377,415 + PGA1_c03900 0.75 -1.4
377,415 + PGA1_c03900 0.75 -2.6
377,517 + PGA1_c03900 0.82 -1.3
377,529 + PGA1_c03900 0.83 -2.1
377,547 - PGA1_c03900 0.84 -2.2
377,554 - PGA1_c03900 0.84 -1.4
377,554 - PGA1_c03900 0.84 -2.1
377,619 - PGA1_c03900 0.88 -0.7
377,665 + -1.9
377,675 + -2.0
377,683 - -1.9
377,726 - -1.9
377,747 + -1.7
377,747 + -2.6
377,755 - -2.5
377,767 - +0.3
377,767 - -1.1
377,798 + -1.2
377,813 - -0.0
377,835 - +0.6
377,918 + PGA1_c03910 0.16 -1.4
377,926 - PGA1_c03910 0.17 +0.7
377,927 + PGA1_c03910 0.18 -1.5
377,935 - PGA1_c03910 0.19 -1.5
377,959 + PGA1_c03910 0.22 -1.2
377,988 + PGA1_c03910 0.26 -1.9
377,988 + PGA1_c03910 0.26 +0.9
377,988 + PGA1_c03910 0.26 -0.2
377,996 - PGA1_c03910 0.27 +0.3
378,001 + PGA1_c03910 0.27 +2.0
378,037 - PGA1_c03910 0.32 -1.4
378,086 + PGA1_c03910 0.38 -1.4
378,210 - PGA1_c03910 0.55 +0.1
378,254 - PGA1_c03910 0.61 -1.7
378,304 - PGA1_c03910 0.67 -1.4
378,304 - PGA1_c03910 0.67 -1.4
378,304 - PGA1_c03910 0.67 -0.7
378,304 - PGA1_c03910 0.67 -1.3
378,304 - PGA1_c03910 0.67 -1.1
378,306 + PGA1_c03910 0.67 -0.9
378,316 - PGA1_c03910 0.69 -1.3
378,399 + PGA1_c03910 0.80 -2.0
378,399 + PGA1_c03910 0.80 +0.5
378,399 + PGA1_c03910 0.80 -0.0
378,407 - PGA1_c03910 0.81 -0.4
378,407 - PGA1_c03910 0.81 -0.7
378,407 - PGA1_c03910 0.81 -0.7
378,427 + PGA1_c03910 0.83 -1.2
378,452 - PGA1_c03910 0.87 +0.6
378,481 - -1.1
378,626 + -0.4
378,644 - -0.5
378,725 - -0.0
378,773 + PGA1_c03920 0.14 -3.1
378,773 + PGA1_c03920 0.14 +0.0
378,933 - PGA1_c03920 0.32 +0.6
379,089 - PGA1_c03920 0.49 -0.4
379,144 - PGA1_c03920 0.56 -0.9
379,157 + PGA1_c03920 0.57 -1.2
379,237 + PGA1_c03920 0.66 -1.4
379,482 + -0.6
379,482 + +1.6
379,490 - +0.4

Or see this region's nucleotide sequence