Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00180

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00160 and PGA1_262p00170 overlap by 4 nucleotidesPGA1_262p00170 and PGA1_262p00180 are separated by 88 nucleotidesPGA1_262p00180 and PGA1_262p00190 are separated by 45 nucleotides PGA1_262p00160: PGA1_262p00160 - Branched-chain amino acid transport protein (AzlD)., at 20,758 to 21,057 _262p00160 PGA1_262p00170: PGA1_262p00170 - Predicted branched-chain amino acid permease (azaleucine resistance), at 21,054 to 21,770 _262p00170 PGA1_262p00180: PGA1_262p00180 - transcriptional regulator, AsnC family, at 21,859 to 22,332 _262p00180 PGA1_262p00190: PGA1_262p00190 - putative transporter, MFS family, at 22,378 to 23,694 _262p00190 Position (kb) 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 20.950 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.025 kb on + strand, within PGA1_262p00160at 21.025 kb on + strand, within PGA1_262p00160at 21.033 kb on - strandat 21.033 kb on - strandat 21.068 kb on - strandat 21.126 kb on + strand, within PGA1_262p00170at 21.218 kb on + strand, within PGA1_262p00170at 21.220 kb on + strand, within PGA1_262p00170at 21.228 kb on - strand, within PGA1_262p00170at 21.278 kb on - strand, within PGA1_262p00170at 21.314 kb on - strand, within PGA1_262p00170at 21.356 kb on - strand, within PGA1_262p00170at 21.356 kb on - strand, within PGA1_262p00170at 21.378 kb on - strand, within PGA1_262p00170at 21.413 kb on - strand, within PGA1_262p00170at 21.420 kb on - strand, within PGA1_262p00170at 21.531 kb on + strand, within PGA1_262p00170at 21.546 kb on + strand, within PGA1_262p00170at 21.687 kb on - strand, within PGA1_262p00170at 21.786 kb on + strandat 21.914 kb on - strand, within PGA1_262p00180at 21.914 kb on - strand, within PGA1_262p00180at 21.939 kb on - strand, within PGA1_262p00180at 21.968 kb on - strand, within PGA1_262p00180at 21.981 kb on - strand, within PGA1_262p00180at 21.981 kb on - strand, within PGA1_262p00180at 22.001 kb on + strand, within PGA1_262p00180at 22.036 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.100 kb on - strand, within PGA1_262p00180at 22.100 kb on - strand, within PGA1_262p00180at 22.200 kb on - strand, within PGA1_262p00180at 22.307 kb on - strandat 22.362 kb on + strandat 22.397 kb on - strandat 22.434 kb on + strandat 22.628 kb on + strand, within PGA1_262p00190at 22.659 kb on + strand, within PGA1_262p00190at 22.727 kb on + strand, within PGA1_262p00190at 22.727 kb on + strand, within PGA1_262p00190at 22.727 kb on + strand, within PGA1_262p00190at 22.741 kb on - strand, within PGA1_262p00190at 23.009 kb on - strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.073 kb on + strand, within PGA1_262p00190at 23.081 kb on - strand, within PGA1_262p00190at 23.218 kb on + strand, within PGA1_262p00190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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20,950 + PGA1_262p00160 0.64 +2.0
21,010 + PGA1_262p00160 0.84 +0.1
21,010 + PGA1_262p00160 0.84 +0.3
21,010 + PGA1_262p00160 0.84 +2.3
21,010 + PGA1_262p00160 0.84 +0.1
21,025 + PGA1_262p00160 0.89 +0.4
21,025 + PGA1_262p00160 0.89 +0.7
21,033 - +0.7
21,033 - +0.8
21,068 - -0.6
21,126 + PGA1_262p00170 0.10 -1.5
21,218 + PGA1_262p00170 0.23 -0.4
21,220 + PGA1_262p00170 0.23 +1.1
21,228 - PGA1_262p00170 0.24 +1.5
21,278 - PGA1_262p00170 0.31 +0.1
21,314 - PGA1_262p00170 0.36 +0.9
21,356 - PGA1_262p00170 0.42 +0.9
21,356 - PGA1_262p00170 0.42 -2.9
21,378 - PGA1_262p00170 0.45 +0.4
21,413 - PGA1_262p00170 0.50 +0.6
21,420 - PGA1_262p00170 0.51 -1.5
21,531 + PGA1_262p00170 0.67 +0.7
21,546 + PGA1_262p00170 0.69 -0.6
21,687 - PGA1_262p00170 0.88 +0.4
21,786 + +1.6
21,914 - PGA1_262p00180 0.12 +0.8
21,914 - PGA1_262p00180 0.12 +0.3
21,939 - PGA1_262p00180 0.17 +0.2
21,968 - PGA1_262p00180 0.23 +0.1
21,981 - PGA1_262p00180 0.26 -0.6
21,981 - PGA1_262p00180 0.26 +1.2
22,001 + PGA1_262p00180 0.30 -0.9
22,036 + PGA1_262p00180 0.37 -0.0
22,052 + PGA1_262p00180 0.41 +0.0
22,052 + PGA1_262p00180 0.41 +0.7
22,052 + PGA1_262p00180 0.41 +0.9
22,052 + PGA1_262p00180 0.41 +0.4
22,052 + PGA1_262p00180 0.41 +0.9
22,060 - PGA1_262p00180 0.42 +0.1
22,060 - PGA1_262p00180 0.42 +0.7
22,060 - PGA1_262p00180 0.42 +1.1
22,060 - PGA1_262p00180 0.42 +1.7
22,100 - PGA1_262p00180 0.51 +1.0
22,100 - PGA1_262p00180 0.51 +1.4
22,200 - PGA1_262p00180 0.72 -2.1
22,307 - -0.3
22,362 + +0.4
22,397 - +0.5
22,434 + +0.9
22,628 + PGA1_262p00190 0.19 -0.3
22,659 + PGA1_262p00190 0.21 +0.7
22,727 + PGA1_262p00190 0.26 -0.3
22,727 + PGA1_262p00190 0.26 +1.6
22,727 + PGA1_262p00190 0.26 +0.0
22,741 - PGA1_262p00190 0.28 -0.5
23,009 - PGA1_262p00190 0.48 -0.3
23,052 + PGA1_262p00190 0.51 +0.9
23,052 + PGA1_262p00190 0.51 -2.1
23,052 + PGA1_262p00190 0.51 -0.4
23,052 + PGA1_262p00190 0.51 -0.0
23,052 + PGA1_262p00190 0.51 +2.3
23,060 - PGA1_262p00190 0.52 -0.4
23,060 - PGA1_262p00190 0.52 -0.6
23,060 - PGA1_262p00190 0.52 +0.2
23,060 - PGA1_262p00190 0.52 -0.3
23,060 - PGA1_262p00190 0.52 +0.3
23,060 - PGA1_262p00190 0.52 +0.6
23,060 - PGA1_262p00190 0.52 -0.9
23,060 - PGA1_262p00190 0.52 +1.6
23,073 + PGA1_262p00190 0.53 +2.6
23,081 - PGA1_262p00190 0.53 +0.7
23,218 + PGA1_262p00190 0.64 +0.5

Or see this region's nucleotide sequence