Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32430

Experiment: m.b. methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. methylglyoxal 0.004 vol%
3,398,333	+		PGA1_c32410	0.81	+0.9
3,398,338	+		PGA1_c32410	0.82	-1.5
3,398,338	+		PGA1_c32410	0.82	-0.3
3,398,339	+		PGA1_c32410	0.82	+0.3
3,398,347	-		PGA1_c32410	0.82	+1.3
3,398,347	-		PGA1_c32410	0.82	-0.5
3,398,365	-		PGA1_c32410	0.83	-0.9
3,398,365	-		PGA1_c32410	0.83	-2.2
3,398,381	+		PGA1_c32410	0.84	-0.5
3,398,383	+		PGA1_c32410	0.85	-0.3
3,398,383	+		PGA1_c32410	0.85	+0.3
3,398,383	+		PGA1_c32410	0.85	-1.4
3,398,383	+		PGA1_c32410	0.85	-3.2
3,398,383	+		PGA1_c32410	0.85	-0.7
3,398,383	+		PGA1_c32410	0.85	-3.0
3,398,391	-		PGA1_c32410	0.85	-0.5
3,398,391	-		PGA1_c32410	0.85	-2.0
3,398,391	-		PGA1_c32410	0.85	+0.3
3,398,412	-		PGA1_c32410	0.86	-1.7
3,398,452	-		PGA1_c32410	0.89	+1.1
3,398,452	-		PGA1_c32410	0.89	-2.1
3,398,452	-		PGA1_c32410	0.89	+1.9
3,398,504	+				+1.2
3,398,504	+				-0.7
3,398,504	+				-2.9
3,398,512	-				-0.4
3,398,512	-				+1.5
3,398,512	-				-1.8
3,398,537	-				-0.7
3,398,595	-				-0.2
3,398,653	+				+0.4
3,398,654	-				-2.0
3,398,656	-				+0.0
3,398,658	+				+1.0
3,398,659	+				+1.5
3,398,659	+				+0.8
3,398,689	-				-3.0
3,398,700	+				-1.1
3,398,710	+				-0.0
3,398,710	+				-0.8
3,398,710	+				+1.1
3,398,710	+				+0.8
3,398,710	+				-1.3
3,398,710	+				-1.0
3,398,718	-				-0.2
3,398,718	-				+0.4
3,398,718	-				+0.1
3,398,718	-				+0.3
3,398,758	-				-2.0
3,398,777	+		PGA1_c32420	0.10	+0.4
3,398,777	+		PGA1_c32420	0.10	-2.1
3,398,777	+		PGA1_c32420	0.10	-0.4
3,398,787	+		PGA1_c32420	0.12	+1.7
3,398,795	-		PGA1_c32420	0.14	-1.7
3,398,808	+		PGA1_c32420	0.16	+0.1
3,398,828	+		PGA1_c32420	0.20	+0.9
3,398,846	-		PGA1_c32420	0.24	+0.9
3,398,854	+		PGA1_c32420	0.25	+1.0
3,398,864	-		PGA1_c32420	0.27	+0.6
3,398,875	+		PGA1_c32420	0.30	+1.3
3,398,890	+		PGA1_c32420	0.33	+0.2
3,398,913	+		PGA1_c32420	0.37	-1.1
3,398,976	+		PGA1_c32420	0.50	-0.0
3,398,986	+		PGA1_c32420	0.51	+0.5
3,398,986	+		PGA1_c32420	0.51	+0.9
3,398,993	+		PGA1_c32420	0.53	-0.2
3,398,999	+		PGA1_c32420	0.54	+0.1
3,399,001	-		PGA1_c32420	0.54	+0.5
3,399,041	+		PGA1_c32420	0.62	-1.7
3,399,049	-		PGA1_c32420	0.64	+0.4
3,399,059	+		PGA1_c32420	0.66	-0.4
3,399,135	+		PGA1_c32420	0.81	+0.5
3,399,135	+		PGA1_c32420	0.81	-0.1
3,399,137	-		PGA1_c32420	0.81	+0.3
3,399,177	-		PGA1_c32420	0.89	-0.0
3,399,177	-		PGA1_c32420	0.89	-1.0
3,399,241	+				+0.5
3,399,241	+				-1.4
3,399,273	-				+1.1
3,399,290	-				+0.1
3,399,298	+				-0.5
3,399,300	-				-2.2
3,399,300	-				-1.3
3,399,356	-				-0.5
3,399,363	+				-1.7
3,399,379	+		PGA1_c32430	0.11	-0.9
3,399,387	-		PGA1_c32430	0.12	-0.0
3,399,395	+		PGA1_c32430	0.14	-0.7
3,399,408	-		PGA1_c32430	0.16	+0.1
3,399,427	+		PGA1_c32430	0.19	-1.9
3,399,464	-		PGA1_c32430	0.26	+0.1
3,399,493	-		PGA1_c32430	0.31	+0.1
3,399,529	+		PGA1_c32430	0.38	+0.5
3,399,530	-		PGA1_c32430	0.38	-1.9
3,399,530	-		PGA1_c32430	0.38	-1.2
3,399,533	+		PGA1_c32430	0.38	+1.0
3,399,548	+		PGA1_c32430	0.41	+0.2
3,399,550	+		PGA1_c32430	0.41	+0.3
3,399,576	-		PGA1_c32430	0.46	-1.0
3,399,588	-		PGA1_c32430	0.48	+2.0
3,399,599	-		PGA1_c32430	0.50	-1.5
3,399,625	+		PGA1_c32430	0.55	-1.9
3,399,633	+		PGA1_c32430	0.56	-1.5
3,399,686	+		PGA1_c32430	0.66	+0.1
3,399,699	-		PGA1_c32430	0.68	-0.1
3,399,699	-		PGA1_c32430	0.68	-0.1
3,399,699	-		PGA1_c32430	0.68	-0.3
3,399,753	-		PGA1_c32430	0.78	-0.4
3,399,763	-		PGA1_c32430	0.80	-0.2
3,399,777	+		PGA1_c32430	0.82	-0.3
3,399,777	+		PGA1_c32430	0.82	-0.4
3,399,783	-		PGA1_c32430	0.83	-1.9
3,399,840	-				-0.9
3,399,884	+				-0.9
3,399,884	+				-0.1
3,399,884	+				+1.0
3,399,892	-				-0.7
3,399,892	-				-0.2
3,399,892	-				-0.0
3,399,892	-				+0.5
3,399,892	-				-1.1
3,399,892	-				+0.1
3,399,892	-				+0.1
3,399,892	-				+1.0
3,399,927	+				+0.4
3,399,956	+				+0.4
3,400,019	+				+2.1
3,400,036	-				-1.0
3,400,103	+				+0.8
3,400,160	+				+1.6
3,400,168	-				-1.3
3,400,359	+		PGA1_c32440	0.15	+0.2
3,400,468	+		PGA1_c32440	0.19	+0.1
3,400,469	+				+0.7
3,400,481	+		PGA1_c32440	0.19	+0.2
3,400,486	+		PGA1_c32440	0.20	+1.5
3,400,525	+		PGA1_c32440	0.21	-0.0
3,400,530	+		PGA1_c32440	0.21	+1.3
3,400,580	-		PGA1_c32440	0.23	-0.5
3,400,595	-		PGA1_c32440	0.24	-1.0
3,400,625	+		PGA1_c32440	0.25	+1.0
3,400,625	+		PGA1_c32440	0.25	-1.2
3,400,625	+		PGA1_c32440	0.25	+0.9
3,400,633	-		PGA1_c32440	0.25	-0.8
3,400,633	-		PGA1_c32440	0.25	-1.0
3,400,633	-		PGA1_c32440	0.25	+1.9
3,400,693	+		PGA1_c32440	0.27	-0.5
3,400,693	+		PGA1_c32440	0.27	+0.5
3,400,749	-		PGA1_c32440	0.29	-1.9
3,400,833	+		PGA1_c32440	0.32	+1.2
3,400,841	-		PGA1_c32440	0.33	-1.0
3,400,841	-		PGA1_c32440	0.33	-1.1
3,400,862	-		PGA1_c32440	0.33	-0.4