Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03250

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03230 and PGA1_c03240 are separated by 62 nucleotidesPGA1_c03240 and PGA1_c03250 overlap by 4 nucleotidesPGA1_c03250 and PGA1_c03260 overlap by 4 nucleotidesPGA1_c03260 and PGA1_c03270 overlap by 4 nucleotides PGA1_c03230: PGA1_c03230 - putative formate dehydrogenase, subunit FdhD, at 309,491 to 310,393 _c03230 PGA1_c03240: PGA1_c03240 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 310,456 to 311,097 _c03240 PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394 _c03260 PGA1_c03270: PGA1_c03270 - molybdopterin molybdenumtransferase MoeA, at 312,391 to 313,647 _c03270 Position (kb) 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 310.153 kb on + strand, within PGA1_c03230at 310.158 kb on + strand, within PGA1_c03230at 310.166 kb on - strand, within PGA1_c03230at 310.299 kb on - strand, within PGA1_c03230at 310.348 kb on - strandat 310.440 kb on + strandat 310.639 kb on + strand, within PGA1_c03240at 310.675 kb on - strand, within PGA1_c03240at 310.707 kb on - strand, within PGA1_c03240at 310.721 kb on - strand, within PGA1_c03240at 310.811 kb on + strand, within PGA1_c03240at 310.816 kb on + strand, within PGA1_c03240at 310.922 kb on + strand, within PGA1_c03240at 310.971 kb on - strand, within PGA1_c03240at 310.981 kb on - strand, within PGA1_c03240at 310.990 kb on + strand, within PGA1_c03240at 310.998 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.049 kb on + strandat 311.057 kb on - strandat 311.076 kb on + strandat 311.099 kb on + strandat 311.099 kb on + strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.109 kb on + strandat 311.124 kb on - strandat 311.179 kb on + strand, within PGA1_c03250at 311.208 kb on + strand, within PGA1_c03250at 311.221 kb on - strand, within PGA1_c03250at 311.270 kb on + strand, within PGA1_c03250at 311.331 kb on + strand, within PGA1_c03250at 311.376 kb on + strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.420 kb on + strand, within PGA1_c03250at 311.422 kb on - strand, within PGA1_c03250at 311.452 kb on + strand, within PGA1_c03250at 311.499 kb on + strand, within PGA1_c03250at 311.508 kb on + strand, within PGA1_c03250at 311.537 kb on - strandat 311.598 kb on + strandat 311.617 kb on - strandat 311.630 kb on + strandat 311.637 kb on + strandat 311.637 kb on + strandat 311.668 kb on - strand, within PGA1_c03260at 311.707 kb on - strand, within PGA1_c03260at 311.757 kb on - strand, within PGA1_c03260at 311.841 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.913 kb on + strand, within PGA1_c03260at 311.952 kb on + strand, within PGA1_c03260at 311.962 kb on + strand, within PGA1_c03260at 311.975 kb on - strand, within PGA1_c03260at 311.984 kb on - strand, within PGA1_c03260at 311.990 kb on + strand, within PGA1_c03260at 311.998 kb on - strand, within PGA1_c03260at 312.016 kb on + strand, within PGA1_c03260at 312.048 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.056 kb on - strand, within PGA1_c03260at 312.058 kb on - strand, within PGA1_c03260at 312.121 kb on + strand, within PGA1_c03260at 312.162 kb on + strand, within PGA1_c03260at 312.187 kb on + strand, within PGA1_c03260at 312.207 kb on - strand, within PGA1_c03260at 312.226 kb on - strand, within PGA1_c03260at 312.236 kb on + strand, within PGA1_c03260at 312.265 kb on + strand, within PGA1_c03260at 312.292 kb on - strand, within PGA1_c03260at 312.345 kb on - strandat 312.345 kb on - strandat 312.364 kb on + strandat 312.442 kb on + strandat 312.536 kb on + strand, within PGA1_c03270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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310,153 + PGA1_c03230 0.73 +1.1
310,158 + PGA1_c03230 0.74 -0.3
310,166 - PGA1_c03230 0.75 +1.5
310,299 - PGA1_c03230 0.89 +1.6
310,348 - +0.7
310,440 + +1.6
310,639 + PGA1_c03240 0.29 +1.6
310,675 - PGA1_c03240 0.34 +0.7
310,707 - PGA1_c03240 0.39 +0.6
310,721 - PGA1_c03240 0.41 -0.8
310,811 + PGA1_c03240 0.55 -0.4
310,816 + PGA1_c03240 0.56 +0.0
310,922 + PGA1_c03240 0.73 -0.1
310,971 - PGA1_c03240 0.80 +0.7
310,981 - PGA1_c03240 0.82 +1.1
310,990 + PGA1_c03240 0.83 -0.2
310,998 - PGA1_c03240 0.84 -1.2
311,024 - PGA1_c03240 0.88 +0.4
311,024 - PGA1_c03240 0.88 -1.2
311,049 + -0.6
311,057 - +1.1
311,076 + +0.1
311,099 + -3.1
311,099 + +0.1
311,107 - +0.7
311,107 - +1.0
311,107 - +0.9
311,107 - +2.6
311,107 - -0.2
311,109 + +0.6
311,124 - -0.1
311,179 + PGA1_c03250 0.17 +0.1
311,208 + PGA1_c03250 0.23 +1.5
311,221 - PGA1_c03250 0.26 +0.8
311,270 + PGA1_c03250 0.36 +0.9
311,331 + PGA1_c03250 0.48 +1.3
311,376 + PGA1_c03250 0.57 +1.1
311,411 - PGA1_c03250 0.64 -0.3
311,411 - PGA1_c03250 0.64 +1.1
311,420 + PGA1_c03250 0.66 +0.3
311,422 - PGA1_c03250 0.67 -1.3
311,452 + PGA1_c03250 0.73 +0.9
311,499 + PGA1_c03250 0.82 +0.5
311,508 + PGA1_c03250 0.84 +0.1
311,537 - +1.9
311,598 + +0.6
311,617 - -0.7
311,630 + -1.2
311,637 + -0.3
311,637 + +0.4
311,668 - PGA1_c03260 0.11 -1.4
311,707 - PGA1_c03260 0.15 -1.3
311,757 - PGA1_c03260 0.22 -1.4
311,841 + PGA1_c03260 0.32 +0.8
311,871 + PGA1_c03260 0.36 -1.4
311,871 + PGA1_c03260 0.36 +2.3
311,871 + PGA1_c03260 0.36 +1.8
311,913 + PGA1_c03260 0.41 +0.5
311,952 + PGA1_c03260 0.46 -0.2
311,962 + PGA1_c03260 0.47 -0.1
311,975 - PGA1_c03260 0.48 -0.7
311,984 - PGA1_c03260 0.49 -0.3
311,990 + PGA1_c03260 0.50 +0.4
311,998 - PGA1_c03260 0.51 -0.3
312,016 + PGA1_c03260 0.53 -0.4
312,048 + PGA1_c03260 0.57 -0.5
312,050 + PGA1_c03260 0.58 +0.4
312,050 + PGA1_c03260 0.58 +2.7
312,050 + PGA1_c03260 0.58 +0.1
312,050 + PGA1_c03260 0.58 -0.4
312,056 - PGA1_c03260 0.58 -2.2
312,058 - PGA1_c03260 0.59 -0.2
312,121 + PGA1_c03260 0.66 -0.9
312,162 + PGA1_c03260 0.71 +1.3
312,187 + PGA1_c03260 0.74 -0.4
312,207 - PGA1_c03260 0.77 +1.1
312,226 - PGA1_c03260 0.79 -0.9
312,236 + PGA1_c03260 0.80 -1.0
312,265 + PGA1_c03260 0.84 +0.8
312,292 - PGA1_c03260 0.87 -2.6
312,345 - +0.7
312,345 - -1.0
312,364 + +0.5
312,442 + -0.0
312,536 + PGA1_c03270 0.12 +1.3

Or see this region's nucleotide sequence