Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03160 and PGA1_c03170 are separated by 24 nucleotides PGA1_c03170 and PGA1_c03180 are separated by 82 nucleotides PGA1_c03180 and PGA1_c03190 are separated by 88 nucleotides PGA1_c03190 and PGA1_c03200 are separated by 8 nucleotides PGA1_c03200 and PGA1_c03210 are separated by 79 nucleotides
PGA1_c03160: PGA1_c03160 - metallo-beta-lactamase-like protein, at 305,300 to 306,337
_c03160
PGA1_c03170: PGA1_c03170 - hypothetical protein, at 306,362 to 306,826
_c03170
PGA1_c03180: PGA1_c03180 - hypothetical protein, at 306,909 to 307,394
_c03180
PGA1_c03190: PGA1_c03190 - Bacterial aa3 type cytochrome c oxidase subunit IV., at 307,483 to 307,617
_c03190
PGA1_c03200: PGA1_c03200 - hypothetical protein, at 307,626 to 308,294
_c03200
PGA1_c03210: PGA1_c03210 - branched-chain amino acid transport protein azlD-like protein, at 308,374 to 308,709
_c03210
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 305.923 kb on - strand, within PGA1_c03160 at 306.014 kb on - strand, within PGA1_c03160 at 306.037 kb on + strand, within PGA1_c03160 at 306.047 kb on + strand, within PGA1_c03160 at 306.073 kb on - strand, within PGA1_c03160 at 306.099 kb on + strand, within PGA1_c03160 at 306.163 kb on + strand, within PGA1_c03160 at 306.233 kb on + strand, within PGA1_c03160 at 306.238 kb on + strand at 306.285 kb on - strand at 306.325 kb on + strand at 306.332 kb on + strand at 306.358 kb on + strand at 306.358 kb on + strand at 306.371 kb on - strand at 306.395 kb on + strand at 306.407 kb on + strand at 306.415 kb on - strand, within PGA1_c03170 at 306.425 kb on - strand, within PGA1_c03170 at 306.425 kb on - strand, within PGA1_c03170 at 306.436 kb on - strand, within PGA1_c03170 at 306.516 kb on + strand, within PGA1_c03170 at 306.524 kb on - strand, within PGA1_c03170 at 306.570 kb on - strand, within PGA1_c03170 at 306.584 kb on + strand, within PGA1_c03170 at 306.592 kb on - strand, within PGA1_c03170 at 306.676 kb on + strand, within PGA1_c03170 at 306.684 kb on - strand, within PGA1_c03170 at 306.832 kb on + strand at 306.837 kb on + strand at 306.900 kb on + strand at 307.016 kb on - strand, within PGA1_c03180 at 307.026 kb on - strand, within PGA1_c03180 at 307.039 kb on + strand, within PGA1_c03180 at 307.093 kb on + strand, within PGA1_c03180 at 307.145 kb on + strand, within PGA1_c03180 at 307.335 kb on + strand, within PGA1_c03180 at 307.346 kb on + strand at 307.423 kb on + strand at 307.423 kb on + strand at 307.423 kb on + strand at 307.431 kb on - strand at 307.571 kb on - strand, within PGA1_c03190 at 307.619 kb on - strand at 307.700 kb on - strand, within PGA1_c03200 at 307.700 kb on - strand, within PGA1_c03200 at 307.750 kb on - strand, within PGA1_c03200 at 307.843 kb on - strand, within PGA1_c03200 at 307.870 kb on + strand, within PGA1_c03200 at 307.981 kb on + strand, within PGA1_c03200 at 307.989 kb on - strand, within PGA1_c03200 at 308.020 kb on + strand, within PGA1_c03200 at 308.035 kb on - strand, within PGA1_c03200 at 308.054 kb on - strand, within PGA1_c03200 at 308.144 kb on - strand, within PGA1_c03200 at 308.194 kb on - strand, within PGA1_c03200 at 308.198 kb on + strand, within PGA1_c03200 at 308.234 kb on - strand at 308.264 kb on + strand at 308.272 kb on - strand at 308.272 kb on - strand at 308.306 kb on - strand at 308.367 kb on + strand at 308.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 305,923 - PGA1_c03160 0.60 +0.5 306,014 - PGA1_c03160 0.69 -1.4 306,037 + PGA1_c03160 0.71 -0.4 306,047 + PGA1_c03160 0.72 +0.7 306,073 - PGA1_c03160 0.74 +1.2 306,099 + PGA1_c03160 0.77 -0.5 306,163 + PGA1_c03160 0.83 +0.7 306,233 + PGA1_c03160 0.90 -2.0 306,238 + +0.6 306,285 - -0.3 306,325 + -0.4 306,332 + -0.7 306,358 + -0.0 306,358 + +0.2 306,371 - -0.4 306,395 + -1.4 306,407 + +2.4 306,415 - PGA1_c03170 0.11 -0.3 306,425 - PGA1_c03170 0.14 -0.4 306,425 - PGA1_c03170 0.14 -0.3 306,436 - PGA1_c03170 0.16 -2.9 306,516 + PGA1_c03170 0.33 +0.2 306,524 - PGA1_c03170 0.35 -0.5 306,570 - PGA1_c03170 0.45 +0.8 306,584 + PGA1_c03170 0.48 +1.2 306,592 - PGA1_c03170 0.49 +1.0 306,676 + PGA1_c03170 0.68 +2.0 306,684 - PGA1_c03170 0.69 +1.2 306,832 + -2.0 306,837 + +0.7 306,900 + -0.6 307,016 - PGA1_c03180 0.22 -1.8 307,026 - PGA1_c03180 0.24 -0.4 307,039 + PGA1_c03180 0.27 -2.8 307,093 + PGA1_c03180 0.38 +0.2 307,145 + PGA1_c03180 0.49 -1.2 307,335 + PGA1_c03180 0.88 -2.0 307,346 + +1.2 307,423 + +0.5 307,423 + +0.2 307,423 + +1.6 307,431 - -1.2 307,571 - PGA1_c03190 0.65 +0.2 307,619 - +1.0 307,700 - PGA1_c03200 0.11 +0.5 307,700 - PGA1_c03200 0.11 -0.4 307,750 - PGA1_c03200 0.19 -0.6 307,843 - PGA1_c03200 0.32 +1.6 307,870 + PGA1_c03200 0.36 +0.4 307,981 + PGA1_c03200 0.53 +0.0 307,989 - PGA1_c03200 0.54 +0.6 308,020 + PGA1_c03200 0.59 +0.9 308,035 - PGA1_c03200 0.61 +0.2 308,054 - PGA1_c03200 0.64 +0.7 308,144 - PGA1_c03200 0.77 +1.0 308,194 - PGA1_c03200 0.85 +1.2 308,198 + PGA1_c03200 0.86 -0.2 308,234 - +0.8 308,264 + +1.5 308,272 - -1.4 308,272 - +1.2 308,306 - -0.4 308,367 + +0.2 308,375 - +1.7
Or see this region's nucleotide sequence