Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02840

Experiment: m.b. methylglyoxal 0.004 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02830 and PGA1_c02840 overlap by 4 nucleotidesPGA1_c02840 and PGA1_c02850 are separated by 236 nucleotides PGA1_c02830: PGA1_c02830 - ABC transporter, ATP-binding protein, at 272,771 to 273,700 _c02830 PGA1_c02840: PGA1_c02840 - inner membrane transport permease, at 273,697 to 274,458 _c02840 PGA1_c02850: PGA1_c02850 - peptidase S49-like protein, at 274,695 to 275,492 _c02850 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 272.716 kb on + strandat 272.716 kb on + strandat 272.716 kb on + strandat 272.722 kb on + strandat 272.724 kb on - strandat 272.724 kb on - strandat 272.727 kb on + strandat 272.727 kb on + strandat 272.732 kb on + strandat 272.735 kb on - strandat 272.742 kb on + strandat 272.745 kb on - strandat 272.788 kb on - strandat 272.820 kb on + strandat 272.820 kb on + strandat 272.828 kb on - strandat 272.830 kb on + strandat 272.830 kb on + strandat 272.838 kb on - strandat 272.838 kb on - strandat 272.850 kb on + strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.858 kb on - strandat 272.919 kb on - strand, within PGA1_c02830at 272.986 kb on + strand, within PGA1_c02830at 272.986 kb on + strand, within PGA1_c02830at 272.986 kb on + strand, within PGA1_c02830at 272.994 kb on - strand, within PGA1_c02830at 272.994 kb on - strand, within PGA1_c02830at 272.997 kb on + strand, within PGA1_c02830at 272.997 kb on + strand, within PGA1_c02830at 273.007 kb on + strand, within PGA1_c02830at 273.053 kb on + strand, within PGA1_c02830at 273.053 kb on + strand, within PGA1_c02830at 273.053 kb on + strand, within PGA1_c02830at 273.061 kb on - strand, within PGA1_c02830at 273.061 kb on - strand, within PGA1_c02830at 273.085 kb on + strand, within PGA1_c02830at 273.110 kb on - strand, within PGA1_c02830at 273.127 kb on + strand, within PGA1_c02830at 273.134 kb on + strand, within PGA1_c02830at 273.284 kb on + strand, within PGA1_c02830at 273.307 kb on + strand, within PGA1_c02830at 273.315 kb on - strand, within PGA1_c02830at 273.315 kb on - strand, within PGA1_c02830at 273.328 kb on - strand, within PGA1_c02830at 273.359 kb on + strand, within PGA1_c02830at 273.379 kb on + strand, within PGA1_c02830at 273.425 kb on + strand, within PGA1_c02830at 273.491 kb on + strand, within PGA1_c02830at 273.501 kb on + strand, within PGA1_c02830at 273.502 kb on + strand, within PGA1_c02830at 273.516 kb on + strand, within PGA1_c02830at 273.516 kb on + strand, within PGA1_c02830at 273.516 kb on + strand, within PGA1_c02830at 273.524 kb on - strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.562 kb on + strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.570 kb on - strand, within PGA1_c02830at 273.582 kb on + strand, within PGA1_c02830at 273.585 kb on + strand, within PGA1_c02830at 273.595 kb on + strand, within PGA1_c02830at 273.601 kb on - strand, within PGA1_c02830at 273.607 kb on + strand, within PGA1_c02830at 273.643 kb on - strandat 273.664 kb on + strandat 273.689 kb on + strandat 273.776 kb on + strand, within PGA1_c02840at 273.776 kb on + strand, within PGA1_c02840at 273.776 kb on + strand, within PGA1_c02840at 273.783 kb on + strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.784 kb on - strand, within PGA1_c02840at 273.790 kb on + strand, within PGA1_c02840at 273.796 kb on + strand, within PGA1_c02840at 273.800 kb on + strand, within PGA1_c02840at 273.808 kb on - strand, within PGA1_c02840at 273.843 kb on + strand, within PGA1_c02840at 273.843 kb on + strand, within PGA1_c02840at 273.843 kb on + strand, within PGA1_c02840at 273.851 kb on - strand, within PGA1_c02840at 273.851 kb on - strand, within PGA1_c02840at 273.855 kb on + strand, within PGA1_c02840at 273.880 kb on + strand, within PGA1_c02840at 273.884 kb on - strand, within PGA1_c02840at 273.888 kb on - strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.909 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.914 kb on + strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.917 kb on - strand, within PGA1_c02840at 273.922 kb on - strand, within PGA1_c02840at 273.959 kb on + strand, within PGA1_c02840at 273.969 kb on - strand, within PGA1_c02840at 274.017 kb on - strand, within PGA1_c02840at 274.021 kb on - strand, within PGA1_c02840at 274.021 kb on - strand, within PGA1_c02840at 274.032 kb on - strand, within PGA1_c02840at 274.069 kb on + strand, within PGA1_c02840at 274.084 kb on + strand, within PGA1_c02840at 274.115 kb on - strand, within PGA1_c02840at 274.150 kb on + strand, within PGA1_c02840at 274.150 kb on + strand, within PGA1_c02840at 274.150 kb on - strand, within PGA1_c02840at 274.233 kb on - strand, within PGA1_c02840at 274.296 kb on + strand, within PGA1_c02840at 274.304 kb on - strand, within PGA1_c02840at 274.304 kb on - strand, within PGA1_c02840at 274.309 kb on - strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.349 kb on + strand, within PGA1_c02840at 274.357 kb on - strand, within PGA1_c02840at 274.357 kb on - strand, within PGA1_c02840at 274.357 kb on - strand, within PGA1_c02840at 274.370 kb on - strand, within PGA1_c02840at 274.375 kb on - strand, within PGA1_c02840at 274.375 kb on - strand, within PGA1_c02840at 274.391 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.406 kb on + strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.414 kb on - strandat 274.452 kb on + strandat 274.452 kb on + strandat 274.473 kb on + strandat 274.481 kb on - strandat 274.488 kb on + strandat 274.496 kb on - strandat 274.500 kb on + strandat 274.500 kb on + strandat 274.500 kb on + strandat 274.500 kb on + strandat 274.508 kb on - strandat 274.529 kb on - strandat 274.539 kb on - strandat 274.590 kb on - strandat 274.590 kb on - strandat 274.795 kb on - strand, within PGA1_c02850at 275.373 kb on + strand, within PGA1_c02850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol%
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272,716 + +1.5
272,716 + +0.0
272,716 + -0.3
272,722 + +0.7
272,724 - -1.6
272,724 - +1.2
272,727 + +0.0
272,727 + +1.6
272,732 + +1.5
272,735 - +0.4
272,742 + -0.6
272,745 - +0.7
272,788 - -0.2
272,820 + -0.8
272,820 + +0.3
272,828 - +2.7
272,830 + +1.5
272,830 + -0.1
272,838 - +0.2
272,838 - +0.0
272,850 + +1.2
272,858 - -0.4
272,858 - +0.7
272,858 - +1.2
272,858 - +1.6
272,858 - -0.6
272,858 - +0.4
272,919 - PGA1_c02830 0.16 +0.4
272,986 + PGA1_c02830 0.23 -0.6
272,986 + PGA1_c02830 0.23 +0.4
272,986 + PGA1_c02830 0.23 +0.2
272,994 - PGA1_c02830 0.24 +0.4
272,994 - PGA1_c02830 0.24 +0.4
272,997 + PGA1_c02830 0.24 +1.2
272,997 + PGA1_c02830 0.24 -0.0
273,007 + PGA1_c02830 0.25 +0.9
273,053 + PGA1_c02830 0.30 +1.9
273,053 + PGA1_c02830 0.30 +0.7
273,053 + PGA1_c02830 0.30 -1.4
273,061 - PGA1_c02830 0.31 -0.4
273,061 - PGA1_c02830 0.31 +0.6
273,085 + PGA1_c02830 0.34 -0.3
273,110 - PGA1_c02830 0.36 +1.6
273,127 + PGA1_c02830 0.38 +0.5
273,134 + PGA1_c02830 0.39 -1.1
273,284 + PGA1_c02830 0.55 -1.6
273,307 + PGA1_c02830 0.58 +1.0
273,315 - PGA1_c02830 0.58 +1.6
273,315 - PGA1_c02830 0.58 -0.1
273,328 - PGA1_c02830 0.60 +0.2
273,359 + PGA1_c02830 0.63 +1.8
273,379 + PGA1_c02830 0.65 -0.8
273,425 + PGA1_c02830 0.70 +1.0
273,491 + PGA1_c02830 0.77 +0.5
273,501 + PGA1_c02830 0.78 +1.2
273,502 + PGA1_c02830 0.79 -2.6
273,516 + PGA1_c02830 0.80 -0.8
273,516 + PGA1_c02830 0.80 +1.5
273,516 + PGA1_c02830 0.80 -0.4
273,524 - PGA1_c02830 0.81 +0.6
273,562 + PGA1_c02830 0.85 -0.4
273,562 + PGA1_c02830 0.85 +0.7
273,562 + PGA1_c02830 0.85 +0.6
273,562 + PGA1_c02830 0.85 +1.0
273,562 + PGA1_c02830 0.85 -0.3
273,562 + PGA1_c02830 0.85 -0.2
273,562 + PGA1_c02830 0.85 +1.9
273,570 - PGA1_c02830 0.86 -1.3
273,570 - PGA1_c02830 0.86 +1.9
273,570 - PGA1_c02830 0.86 -0.7
273,570 - PGA1_c02830 0.86 +1.2
273,570 - PGA1_c02830 0.86 +1.4
273,570 - PGA1_c02830 0.86 +1.7
273,570 - PGA1_c02830 0.86 -0.2
273,570 - PGA1_c02830 0.86 -2.0
273,570 - PGA1_c02830 0.86 -1.3
273,570 - PGA1_c02830 0.86 -0.2
273,570 - PGA1_c02830 0.86 +2.7
273,570 - PGA1_c02830 0.86 -0.8
273,570 - PGA1_c02830 0.86 +1.0
273,570 - PGA1_c02830 0.86 +1.2
273,570 - PGA1_c02830 0.86 +0.5
273,570 - PGA1_c02830 0.86 -0.5
273,570 - PGA1_c02830 0.86 -1.1
273,570 - PGA1_c02830 0.86 -0.9
273,570 - PGA1_c02830 0.86 -1.4
273,570 - PGA1_c02830 0.86 +0.2
273,570 - PGA1_c02830 0.86 +0.2
273,570 - PGA1_c02830 0.86 +1.4
273,570 - PGA1_c02830 0.86 +1.4
273,570 - PGA1_c02830 0.86 +0.3
273,570 - PGA1_c02830 0.86 -0.2
273,570 - PGA1_c02830 0.86 +0.6
273,570 - PGA1_c02830 0.86 -0.3
273,570 - PGA1_c02830 0.86 -1.2
273,582 + PGA1_c02830 0.87 +0.6
273,585 + PGA1_c02830 0.88 +2.3
273,595 + PGA1_c02830 0.89 +0.5
273,601 - PGA1_c02830 0.89 -0.2
273,607 + PGA1_c02830 0.90 +1.0
273,643 - +0.9
273,664 + -0.3
273,689 + -0.8
273,776 + PGA1_c02840 0.10 +0.6
273,776 + PGA1_c02840 0.10 -0.2
273,776 + PGA1_c02840 0.10 +1.2
273,783 + PGA1_c02840 0.11 -3.0
273,784 - PGA1_c02840 0.11 +1.2
273,784 - PGA1_c02840 0.11 -0.5
273,784 - PGA1_c02840 0.11 +0.4
273,784 - PGA1_c02840 0.11 +0.1
273,784 - PGA1_c02840 0.11 +0.2
273,784 - PGA1_c02840 0.11 +0.3
273,784 - PGA1_c02840 0.11 -0.4
273,784 - PGA1_c02840 0.11 +0.9
273,784 - PGA1_c02840 0.11 +0.3
273,790 + PGA1_c02840 0.12 +1.0
273,796 + PGA1_c02840 0.13 +1.1
273,800 + PGA1_c02840 0.14 -1.4
273,808 - PGA1_c02840 0.15 -0.8
273,843 + PGA1_c02840 0.19 +2.2
273,843 + PGA1_c02840 0.19 +1.2
273,843 + PGA1_c02840 0.19 +1.3
273,851 - PGA1_c02840 0.20 -0.0
273,851 - PGA1_c02840 0.20 -1.0
273,855 + PGA1_c02840 0.21 -0.6
273,880 + PGA1_c02840 0.24 +0.9
273,884 - PGA1_c02840 0.25 +0.6
273,888 - PGA1_c02840 0.25 +0.8
273,909 + PGA1_c02840 0.28 +2.7
273,909 + PGA1_c02840 0.28 +0.2
273,909 + PGA1_c02840 0.28 -0.2
273,909 + PGA1_c02840 0.28 -0.2
273,914 + PGA1_c02840 0.28 +1.2
273,914 + PGA1_c02840 0.28 +1.0
273,914 + PGA1_c02840 0.28 -0.2
273,914 + PGA1_c02840 0.28 +0.7
273,917 - PGA1_c02840 0.29 +0.5
273,917 - PGA1_c02840 0.29 -0.6
273,917 - PGA1_c02840 0.29 +1.2
273,917 - PGA1_c02840 0.29 -1.0
273,917 - PGA1_c02840 0.29 -2.7
273,917 - PGA1_c02840 0.29 +0.1
273,922 - PGA1_c02840 0.30 +0.6
273,959 + PGA1_c02840 0.34 +1.0
273,969 - PGA1_c02840 0.36 +1.2
274,017 - PGA1_c02840 0.42 -0.3
274,021 - PGA1_c02840 0.43 +0.2
274,021 - PGA1_c02840 0.43 +0.6
274,032 - PGA1_c02840 0.44 +0.4
274,069 + PGA1_c02840 0.49 +0.5
274,084 + PGA1_c02840 0.51 +1.4
274,115 - PGA1_c02840 0.55 +0.8
274,150 + PGA1_c02840 0.59 -1.6
274,150 + PGA1_c02840 0.59 +0.0
274,150 - PGA1_c02840 0.59 -0.1
274,233 - PGA1_c02840 0.70 -0.6
274,296 + PGA1_c02840 0.79 +0.9
274,304 - PGA1_c02840 0.80 +1.3
274,304 - PGA1_c02840 0.80 +0.6
274,309 - PGA1_c02840 0.80 -0.5
274,349 + PGA1_c02840 0.86 +0.2
274,349 + PGA1_c02840 0.86 -0.8
274,349 + PGA1_c02840 0.86 +2.5
274,349 + PGA1_c02840 0.86 +0.7
274,349 + PGA1_c02840 0.86 -2.4
274,357 - PGA1_c02840 0.87 +0.2
274,357 - PGA1_c02840 0.87 +0.5
274,357 - PGA1_c02840 0.87 +0.7
274,370 - PGA1_c02840 0.88 -1.0
274,375 - PGA1_c02840 0.89 -0.2
274,375 - PGA1_c02840 0.89 -0.1
274,391 + -0.4
274,406 + +1.2
274,406 + +0.8
274,406 + -0.6
274,406 + +0.8
274,406 + +1.6
274,406 + +0.9
274,406 + +0.9
274,406 + -1.5
274,414 - -0.2
274,414 - -0.8
274,414 - -1.0
274,414 - +0.4
274,414 - +1.4
274,414 - +2.1
274,414 - -1.4
274,452 + -0.4
274,452 + +1.0
274,473 + +0.0
274,481 - -2.0
274,488 + -0.8
274,496 - +0.7
274,500 + +1.0
274,500 + +1.3
274,500 + +0.8
274,500 + -0.3
274,508 - -0.1
274,529 - -1.6
274,539 - +0.6
274,590 - -0.4
274,590 - +0.1
274,795 - PGA1_c02850 0.13 +2.2
275,373 + PGA1_c02850 0.85 +0.7

Or see this region's nucleotide sequence