Experiment: m.b. methylglyoxal 0.004 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02790 and PGA1_c02800 are separated by 80 nucleotides PGA1_c02800 and PGA1_c02810 are separated by 43 nucleotides PGA1_c02810 and PGA1_c02820 are separated by 9 nucleotides PGA1_c02820 and PGA1_c02830 are separated by 195 nucleotides
PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686
_c02790
PGA1_c02800: PGA1_c02800 - putative transcriptional regulator, AraC family, at 269,767 to 270,639
_c02800
PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909
_c02810
PGA1_c02820: PGA1_c02820 - putative transcriptional regulator, AraC family, at 271,919 to 272,575
_c02820
PGA1_c02830: PGA1_c02830 - ABC transporter, ATP-binding protein, at 272,771 to 273,700
_c02830
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 269.692 kb on + strand at 269.693 kb on + strand at 269.698 kb on + strand at 269.698 kb on + strand at 269.701 kb on - strand at 269.753 kb on + strand at 269.770 kb on - strand at 269.851 kb on + strand at 270.009 kb on - strand, within PGA1_c02800 at 270.107 kb on - strand, within PGA1_c02800 at 270.115 kb on - strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.140 kb on + strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.148 kb on - strand, within PGA1_c02800 at 270.158 kb on - strand, within PGA1_c02800 at 270.189 kb on + strand, within PGA1_c02800 at 270.189 kb on + strand, within PGA1_c02800 at 270.197 kb on - strand, within PGA1_c02800 at 270.197 kb on - strand, within PGA1_c02800 at 270.260 kb on + strand, within PGA1_c02800 at 270.294 kb on - strand, within PGA1_c02800 at 270.294 kb on - strand, within PGA1_c02800 at 270.370 kb on - strand, within PGA1_c02800 at 270.463 kb on - strand, within PGA1_c02800 at 270.532 kb on + strand, within PGA1_c02800 at 270.606 kb on + strand at 270.606 kb on + strand at 270.617 kb on + strand at 270.632 kb on - strand at 270.725 kb on - strand at 270.733 kb on + strand at 270.741 kb on - strand at 270.741 kb on - strand at 270.771 kb on - strand at 270.785 kb on - strand at 270.839 kb on + strand, within PGA1_c02810 at 270.883 kb on - strand, within PGA1_c02810 at 270.989 kb on - strand, within PGA1_c02810 at 270.993 kb on - strand, within PGA1_c02810 at 271.016 kb on - strand, within PGA1_c02810 at 271.016 kb on - strand, within PGA1_c02810 at 271.023 kb on + strand, within PGA1_c02810 at 271.122 kb on + strand, within PGA1_c02810 at 271.144 kb on + strand, within PGA1_c02810 at 271.144 kb on + strand, within PGA1_c02810 at 271.151 kb on - strand, within PGA1_c02810 at 271.152 kb on - strand, within PGA1_c02810 at 271.168 kb on + strand, within PGA1_c02810 at 271.223 kb on - strand, within PGA1_c02810 at 271.273 kb on + strand, within PGA1_c02810 at 271.281 kb on - strand, within PGA1_c02810 at 271.282 kb on - strand, within PGA1_c02810 at 271.290 kb on + strand, within PGA1_c02810 at 271.303 kb on + strand, within PGA1_c02810 at 271.309 kb on + strand, within PGA1_c02810 at 271.385 kb on + strand, within PGA1_c02810 at 271.390 kb on - strand, within PGA1_c02810 at 271.452 kb on + strand, within PGA1_c02810 at 271.489 kb on + strand, within PGA1_c02810 at 271.496 kb on + strand, within PGA1_c02810 at 271.504 kb on - strand, within PGA1_c02810 at 271.504 kb on - strand, within PGA1_c02810 at 271.618 kb on - strand, within PGA1_c02810 at 271.670 kb on + strand, within PGA1_c02810 at 271.690 kb on + strand, within PGA1_c02810 at 271.692 kb on - strand, within PGA1_c02810 at 271.700 kb on - strand, within PGA1_c02810 at 271.706 kb on + strand, within PGA1_c02810 at 271.794 kb on + strand at 271.835 kb on + strand at 271.835 kb on + strand at 271.835 kb on + strand at 271.843 kb on - strand at 271.843 kb on - strand at 271.870 kb on + strand at 271.873 kb on - strand at 271.895 kb on + strand at 271.903 kb on + strand at 271.918 kb on - strand at 272.044 kb on + strand, within PGA1_c02820 at 272.052 kb on - strand, within PGA1_c02820 at 272.052 kb on - strand, within PGA1_c02820 at 272.133 kb on - strand, within PGA1_c02820 at 272.133 kb on - strand, within PGA1_c02820 at 272.150 kb on + strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.158 kb on - strand, within PGA1_c02820 at 272.160 kb on + strand, within PGA1_c02820 at 272.160 kb on + strand, within PGA1_c02820 at 272.168 kb on - strand, within PGA1_c02820 at 272.168 kb on - strand, within PGA1_c02820 at 272.168 kb on - strand, within PGA1_c02820 at 272.195 kb on - strand, within PGA1_c02820 at 272.254 kb on - strand, within PGA1_c02820 at 272.290 kb on + strand, within PGA1_c02820 at 272.300 kb on + strand, within PGA1_c02820 at 272.310 kb on - strand, within PGA1_c02820 at 272.339 kb on - strand, within PGA1_c02820 at 272.404 kb on + strand, within PGA1_c02820 at 272.404 kb on + strand, within PGA1_c02820 at 272.412 kb on - strand, within PGA1_c02820 at 272.412 kb on - strand, within PGA1_c02820 at 272.412 kb on - strand, within PGA1_c02820 at 272.414 kb on + strand, within PGA1_c02820 at 272.414 kb on + strand, within PGA1_c02820 at 272.414 kb on + strand, within PGA1_c02820 at 272.422 kb on - strand, within PGA1_c02820 at 272.428 kb on + strand, within PGA1_c02820 at 272.443 kb on - strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.470 kb on + strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.478 kb on - strand, within PGA1_c02820 at 272.493 kb on + strand, within PGA1_c02820 at 272.537 kb on + strand at 272.664 kb on - strand at 272.674 kb on + strand at 272.674 kb on + strand at 272.674 kb on + strand at 272.682 kb on - strand at 272.682 kb on - strand at 272.716 kb on + strand at 272.716 kb on + strand at 272.716 kb on + strand at 272.722 kb on + strand at 272.724 kb on - strand at 272.724 kb on - strand at 272.727 kb on + strand at 272.727 kb on + strand at 272.732 kb on + strand at 272.735 kb on - strand at 272.742 kb on + strand at 272.745 kb on - strand at 272.788 kb on - strand at 272.820 kb on + strand at 272.820 kb on + strand at 272.828 kb on - strand at 272.830 kb on + strand at 272.830 kb on + strand at 272.838 kb on - strand at 272.838 kb on - strand at 272.850 kb on + strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand at 272.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.004 vol% remove 269,692 + +0.7 269,693 + +2.9 269,698 + +1.1 269,698 + -1.2 269,701 - +0.3 269,753 + +1.7 269,770 - +0.6 269,851 + +1.7 270,009 - PGA1_c02800 0.28 +0.1 270,107 - PGA1_c02800 0.39 -0.0 270,115 - PGA1_c02800 0.40 +0.1 270,140 + PGA1_c02800 0.43 -0.2 270,140 + PGA1_c02800 0.43 +0.7 270,140 + PGA1_c02800 0.43 -0.4 270,148 - PGA1_c02800 0.44 +0.5 270,148 - PGA1_c02800 0.44 -1.4 270,148 - PGA1_c02800 0.44 +1.6 270,158 - PGA1_c02800 0.45 -0.5 270,189 + PGA1_c02800 0.48 +0.7 270,189 + PGA1_c02800 0.48 -0.3 270,197 - PGA1_c02800 0.49 -0.6 270,197 - PGA1_c02800 0.49 -0.5 270,260 + PGA1_c02800 0.56 -2.0 270,294 - PGA1_c02800 0.60 -1.0 270,294 - PGA1_c02800 0.60 +1.8 270,370 - PGA1_c02800 0.69 -0.2 270,463 - PGA1_c02800 0.80 +0.4 270,532 + PGA1_c02800 0.88 -1.8 270,606 + +0.3 270,606 + -1.3 270,617 + +0.2 270,632 - -0.4 270,725 - +1.2 270,733 + -0.2 270,741 - -0.4 270,741 - +1.0 270,771 - +0.3 270,785 - -0.2 270,839 + PGA1_c02810 0.13 +0.2 270,883 - PGA1_c02810 0.16 +0.7 270,989 - PGA1_c02810 0.25 -0.1 270,993 - PGA1_c02810 0.25 +1.4 271,016 - PGA1_c02810 0.27 +0.9 271,016 - PGA1_c02810 0.27 +0.1 271,023 + PGA1_c02810 0.28 +0.0 271,122 + PGA1_c02810 0.36 +0.1 271,144 + PGA1_c02810 0.38 +0.3 271,144 + PGA1_c02810 0.38 +0.7 271,151 - PGA1_c02810 0.38 -1.0 271,152 - PGA1_c02810 0.38 +0.3 271,168 + PGA1_c02810 0.40 +1.6 271,223 - PGA1_c02810 0.44 +0.5 271,273 + PGA1_c02810 0.48 +1.2 271,281 - PGA1_c02810 0.49 -0.3 271,282 - PGA1_c02810 0.49 -1.6 271,290 + PGA1_c02810 0.49 -1.2 271,303 + PGA1_c02810 0.51 -0.1 271,309 + PGA1_c02810 0.51 +0.0 271,385 + PGA1_c02810 0.57 -1.1 271,390 - PGA1_c02810 0.58 +1.0 271,452 + PGA1_c02810 0.63 +0.3 271,489 + PGA1_c02810 0.66 +0.4 271,496 + PGA1_c02810 0.66 +0.4 271,504 - PGA1_c02810 0.67 -1.4 271,504 - PGA1_c02810 0.67 +1.0 271,618 - PGA1_c02810 0.76 +0.6 271,670 + PGA1_c02810 0.80 -0.0 271,690 + PGA1_c02810 0.82 +2.0 271,692 - PGA1_c02810 0.82 -0.8 271,700 - PGA1_c02810 0.83 -0.4 271,706 + PGA1_c02810 0.83 +0.2 271,794 + +1.2 271,835 + -1.1 271,835 + +1.5 271,835 + -3.1 271,843 - -0.1 271,843 - +0.6 271,870 + +1.4 271,873 - -1.8 271,895 + -0.8 271,903 + +0.3 271,918 - +0.7 272,044 + PGA1_c02820 0.19 -0.4 272,052 - PGA1_c02820 0.20 +0.1 272,052 - PGA1_c02820 0.20 -0.4 272,133 - PGA1_c02820 0.33 -0.0 272,133 - PGA1_c02820 0.33 -0.6 272,150 + PGA1_c02820 0.35 +0.2 272,158 - PGA1_c02820 0.36 +0.2 272,158 - PGA1_c02820 0.36 -0.1 272,158 - PGA1_c02820 0.36 -1.0 272,158 - PGA1_c02820 0.36 -1.2 272,160 + PGA1_c02820 0.37 +1.7 272,160 + PGA1_c02820 0.37 +0.4 272,168 - PGA1_c02820 0.38 -0.8 272,168 - PGA1_c02820 0.38 -0.0 272,168 - PGA1_c02820 0.38 +0.6 272,195 - PGA1_c02820 0.42 -0.5 272,254 - PGA1_c02820 0.51 -0.9 272,290 + PGA1_c02820 0.56 -0.1 272,300 + PGA1_c02820 0.58 -0.8 272,310 - PGA1_c02820 0.60 -0.3 272,339 - PGA1_c02820 0.64 +0.7 272,404 + PGA1_c02820 0.74 +0.5 272,404 + PGA1_c02820 0.74 -1.0 272,412 - PGA1_c02820 0.75 +0.6 272,412 - PGA1_c02820 0.75 +0.0 272,412 - PGA1_c02820 0.75 -1.1 272,414 + PGA1_c02820 0.75 +0.6 272,414 + PGA1_c02820 0.75 +0.3 272,414 + PGA1_c02820 0.75 -0.7 272,422 - PGA1_c02820 0.77 +0.5 272,428 + PGA1_c02820 0.77 +0.1 272,443 - PGA1_c02820 0.80 +1.3 272,470 + PGA1_c02820 0.84 -1.0 272,470 + PGA1_c02820 0.84 +0.7 272,470 + PGA1_c02820 0.84 -0.4 272,470 + PGA1_c02820 0.84 +2.2 272,470 + PGA1_c02820 0.84 -0.3 272,470 + PGA1_c02820 0.84 +1.0 272,470 + PGA1_c02820 0.84 -2.0 272,470 + PGA1_c02820 0.84 -0.4 272,470 + PGA1_c02820 0.84 -0.8 272,470 + PGA1_c02820 0.84 -0.8 272,478 - PGA1_c02820 0.85 -0.1 272,478 - PGA1_c02820 0.85 -1.7 272,478 - PGA1_c02820 0.85 +1.2 272,478 - PGA1_c02820 0.85 +0.2 272,478 - PGA1_c02820 0.85 +0.2 272,478 - PGA1_c02820 0.85 +0.2 272,478 - PGA1_c02820 0.85 -1.0 272,478 - PGA1_c02820 0.85 +1.5 272,478 - PGA1_c02820 0.85 +0.1 272,478 - PGA1_c02820 0.85 +2.2 272,478 - PGA1_c02820 0.85 +1.2 272,478 - PGA1_c02820 0.85 +0.6 272,478 - PGA1_c02820 0.85 -1.6 272,478 - PGA1_c02820 0.85 +1.2 272,493 + PGA1_c02820 0.87 +0.2 272,537 + -1.8 272,664 - -0.4 272,674 + +1.8 272,674 + +3.5 272,674 + -0.3 272,682 - -0.6 272,682 - -0.0 272,716 + +1.5 272,716 + +0.0 272,716 + -0.3 272,722 + +0.7 272,724 - -1.6 272,724 - +1.2 272,727 + +0.0 272,727 + +1.6 272,732 + +1.5 272,735 - +0.4 272,742 + -0.6 272,745 - +0.7 272,788 - -0.2 272,820 + -0.8 272,820 + +0.3 272,828 - +2.7 272,830 + +1.5 272,830 + -0.1 272,838 - +0.2 272,838 - +0.0 272,850 + +1.2 272,858 - -0.4 272,858 - +0.7 272,858 - +1.2 272,858 - +1.6 272,858 - -0.6 272,858 - +0.4
Or see this region's nucleotide sequence