Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20520

Experiment: m.b. methylglyoxal 0.004 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. methylglyoxal 0.004 vol%
2,125,116	-		PGA1_c20500	0.84	+0.5
2,125,167	+		PGA1_c20500	0.88	+0.4
2,125,176	+		PGA1_c20500	0.89	+0.1
2,125,176	+		PGA1_c20500	0.89	+0.4
2,125,212	-				+0.6
2,125,212	-				-1.0
2,125,261	+				+0.1
2,125,296	-				-0.5
2,125,301	-				-1.9
2,125,311	+				+0.2
2,125,327	-				-0.9
2,125,415	+				-0.4
2,125,415	+				+0.2
2,125,423	-				+1.1
2,125,423	-				-1.7
2,125,467	+				-1.2
2,125,470	-				-1.1
2,125,502	+				+2.3
2,125,510	-				+0.7
2,125,510	-				-0.9
2,125,510	-				+0.7
2,125,510	-				-0.1
2,125,533	+				-0.7
2,125,546	-				+0.2
2,125,546	-				-0.7
2,125,585	+		PGA1_c20510	0.18	-2.4
2,125,585	+		PGA1_c20510	0.18	+0.7
2,125,585	+		PGA1_c20510	0.18	-1.9
2,125,586	+		PGA1_c20510	0.19	-0.3
2,125,593	-		PGA1_c20510	0.21	+0.7
2,125,632	+		PGA1_c20510	0.36	+1.1
2,125,640	-		PGA1_c20510	0.38	+1.8
2,125,706	-		PGA1_c20510	0.63	+0.1
2,125,757	+		PGA1_c20510	0.81	-0.2
2,125,861	+				+1.3
2,125,861	+				-0.0
2,125,869	-				+0.5
2,125,869	-				-1.1
2,125,994	-				-1.0
2,126,039	+				-0.0
2,126,120	+		PGA1_c20520	0.12	-2.0
2,126,135	+		PGA1_c20520	0.13	+0.3
2,126,143	-		PGA1_c20520	0.14	+0.6
2,126,193	+		PGA1_c20520	0.19	+0.9
2,126,206	-		PGA1_c20520	0.20	-0.4
2,126,218	+		PGA1_c20520	0.21	+1.2
2,126,280	-		PGA1_c20520	0.27	-2.3
2,126,295	-		PGA1_c20520	0.29	-1.1
2,126,342	+		PGA1_c20520	0.33	+0.1
2,126,342	+		PGA1_c20520	0.33	-0.4
2,126,342	+		PGA1_c20520	0.33	+0.9
2,126,350	-		PGA1_c20520	0.34	-0.9
2,126,377	+		PGA1_c20520	0.37	-0.6
2,126,382	+		PGA1_c20520	0.37	-0.5
2,126,390	-		PGA1_c20520	0.38	-0.1
2,126,390	-		PGA1_c20520	0.38	-1.1
2,126,390	-		PGA1_c20520	0.38	-0.9
2,126,390	-		PGA1_c20520	0.38	-2.1
2,126,390	-		PGA1_c20520	0.38	+3.3
2,126,390	-		PGA1_c20520	0.38	-0.1
2,126,417	-		PGA1_c20520	0.40	-1.0
2,126,422	-		PGA1_c20520	0.41	+2.5
2,126,424	-		PGA1_c20520	0.41	-0.4
2,126,480	+		PGA1_c20520	0.46	-2.7
2,126,488	+		PGA1_c20520	0.47	+0.2
2,126,488	+		PGA1_c20520	0.47	+0.2
2,126,488	+		PGA1_c20520	0.47	-0.5
2,126,488	-		PGA1_c20520	0.47	-0.8
2,126,488	-		PGA1_c20520	0.47	+1.1
2,126,542	+		PGA1_c20520	0.52	+0.4
2,126,551	-		PGA1_c20520	0.53	+0.7
2,126,554	+		PGA1_c20520	0.54	-0.5
2,126,562	-		PGA1_c20520	0.54	-0.8
2,126,595	-		PGA1_c20520	0.58	-1.3
2,126,612	+		PGA1_c20520	0.59	+0.5
2,126,620	-		PGA1_c20520	0.60	-2.3
2,126,695	+		PGA1_c20520	0.67	-0.3
2,126,695	+		PGA1_c20520	0.67	-0.4
2,126,695	+		PGA1_c20520	0.67	+0.7
2,126,703	-		PGA1_c20520	0.68	-0.5
2,126,730	+		PGA1_c20520	0.71	-0.9
2,126,767	-		PGA1_c20520	0.74	-0.3
2,126,768	-		PGA1_c20520	0.74	-1.1
2,126,827	-		PGA1_c20520	0.80	+0.3
2,126,883	+		PGA1_c20520	0.85	-0.2
2,126,904	+		PGA1_c20520	0.87	-1.1
2,126,910	+		PGA1_c20520	0.88	+0.7
2,126,912	-		PGA1_c20520	0.88	-1.4
2,126,912	-		PGA1_c20520	0.88	+0.7
2,126,963	+				+1.3
2,126,968	+				+0.6
2,126,968	+				+0.2
2,126,971	-				+1.2
2,126,976	+				+0.0
2,126,976	-				+0.7
2,127,003	-				-0.7
2,127,010	+				-0.2
2,127,068	+				-0.3
2,127,188	+		PGA1_c20530	0.16	+1.5
2,127,198	+		PGA1_c20530	0.19	-1.1
2,127,205	+		PGA1_c20530	0.20	-2.6
2,127,303	-		PGA1_c20530	0.43	-0.6
2,127,315	+		PGA1_c20530	0.46	+0.4
2,127,396	+		PGA1_c20530	0.65	-0.4
2,127,446	-		PGA1_c20530	0.77	+1.6
2,127,469	+		PGA1_c20530	0.83	-0.5
2,127,477	-		PGA1_c20530	0.85	-1.1
2,127,495	+		PGA1_c20530	0.89	-0.1
2,127,513	+				-1.6
2,127,513	+				+1.0
2,127,521	-				+0.2
2,127,521	-				+0.4
2,127,521	-				-0.1
2,127,618	+				-0.5
2,127,626	+				-0.7
2,127,626	+				-0.1
2,127,626	+				-1.5
2,127,626	+				-0.9
2,127,626	+				+1.1
2,127,626	+				-0.7
2,127,626	+				+0.4
2,127,626	+				-1.9
2,127,626	+				+1.0
2,127,626	-				+1.2
2,127,628	+				-0.1
2,127,631	+				+0.2
2,127,634	-				-0.8
2,127,634	-				-1.4
2,127,634	-				+0.5
2,127,634	-				+0.7
2,127,634	-				+0.7
2,127,634	-				-0.9
2,127,634	-				-0.1
2,127,683	-		PGA1_c20535	0.18	-0.3
2,127,779	+		PGA1_c20535	0.42	-0.1
2,127,835	-		PGA1_c20535	0.56	+0.4
2,127,837	-		PGA1_c20535	0.56	+0.1
2,127,844	-		PGA1_c20535	0.58	+1.7
2,127,844	-		PGA1_c20535	0.58	+0.9
2,127,911	-		PGA1_c20535	0.74	-0.1
2,127,927	+		PGA1_c20535	0.78	-0.1
2,127,927	+		PGA1_c20535	0.78	+0.0
2,128,022	-				-0.8