Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3387 and Dsui_3388 are separated by 222 nucleotides Dsui_3388 and Dsui_3389 are separated by 135 nucleotides Dsui_3389 and Dsui_3390 are separated by 19 nucleotides
Dsui_3387: Dsui_3387 - histidine kinase,histidine kinase,MASE1-containing protein, at 3,630,400 to 3,632,037
_3387
Dsui_3388: Dsui_3388 - hypothetical protein, at 3,632,260 to 3,633,627
_3388
Dsui_3389: Dsui_3389 - enoyl-CoA hydratase/carnithine racemase, at 3,633,763 to 3,634,542
_3389
Dsui_3390: Dsui_3390 - hypothetical protein, at 3,634,562 to 3,635,101
_3390
Position (kb)
3632
3633
3634 Strain fitness (log2 ratio)
-2
-1
0
1 at 3632.073 kb on - strand at 3632.164 kb on + strand at 3632.164 kb on + strand at 3632.169 kb on + strand at 3632.177 kb on - strand at 3632.266 kb on - strand at 3632.432 kb on + strand, within Dsui_3388 at 3632.482 kb on + strand, within Dsui_3388 at 3632.518 kb on + strand, within Dsui_3388 at 3632.521 kb on - strand, within Dsui_3388 at 3632.521 kb on - strand, within Dsui_3388 at 3632.545 kb on - strand, within Dsui_3388 at 3632.586 kb on - strand, within Dsui_3388 at 3632.612 kb on - strand, within Dsui_3388 at 3632.686 kb on + strand, within Dsui_3388 at 3632.726 kb on + strand, within Dsui_3388 at 3632.817 kb on + strand, within Dsui_3388 at 3632.845 kb on + strand, within Dsui_3388 at 3632.853 kb on - strand, within Dsui_3388 at 3632.927 kb on + strand, within Dsui_3388 at 3632.937 kb on + strand, within Dsui_3388 at 3633.010 kb on - strand, within Dsui_3388 at 3633.043 kb on - strand, within Dsui_3388 at 3633.049 kb on + strand, within Dsui_3388 at 3633.054 kb on + strand at 3633.057 kb on - strand, within Dsui_3388 at 3633.157 kb on - strand, within Dsui_3388 at 3633.192 kb on + strand, within Dsui_3388 at 3633.264 kb on + strand, within Dsui_3388 at 3633.271 kb on + strand, within Dsui_3388 at 3633.369 kb on + strand at 3633.383 kb on - strand, within Dsui_3388 at 3633.407 kb on + strand, within Dsui_3388 at 3633.415 kb on - strand, within Dsui_3388 at 3633.415 kb on - strand, within Dsui_3388 at 3633.453 kb on + strand, within Dsui_3388 at 3633.466 kb on + strand, within Dsui_3388 at 3633.471 kb on + strand at 3633.508 kb on + strand at 3633.539 kb on - strand at 3633.632 kb on - strand at 3633.740 kb on - strand at 3633.956 kb on + strand, within Dsui_3389 at 3634.002 kb on - strand, within Dsui_3389 at 3634.063 kb on - strand, within Dsui_3389 at 3634.073 kb on - strand at 3634.120 kb on + strand, within Dsui_3389 at 3634.181 kb on + strand, within Dsui_3389 at 3634.203 kb on - strand, within Dsui_3389 at 3634.346 kb on - strand, within Dsui_3389 at 3634.453 kb on - strand, within Dsui_3389 at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.465 kb on + strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.473 kb on - strand at 3634.529 kb on + strand at 3634.529 kb on + strand at 3634.542 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,632,073 - -0.8 3,632,164 + +1.1 3,632,164 + +0.3 3,632,169 + -0.2 3,632,177 - -0.7 3,632,266 - -1.5 3,632,432 + Dsui_3388 0.13 +0.9 3,632,482 + Dsui_3388 0.16 +0.9 3,632,518 + Dsui_3388 0.19 -1.2 3,632,521 - Dsui_3388 0.19 +0.4 3,632,521 - Dsui_3388 0.19 +0.1 3,632,545 - Dsui_3388 0.21 -0.1 3,632,586 - Dsui_3388 0.24 +0.1 3,632,612 - Dsui_3388 0.26 -0.1 3,632,686 + Dsui_3388 0.31 -0.7 3,632,726 + Dsui_3388 0.34 +0.8 3,632,817 + Dsui_3388 0.41 +0.9 3,632,845 + Dsui_3388 0.43 -0.1 3,632,853 - Dsui_3388 0.43 -0.3 3,632,927 + Dsui_3388 0.49 +0.4 3,632,937 + Dsui_3388 0.49 -0.4 3,633,010 - Dsui_3388 0.55 -1.2 3,633,043 - Dsui_3388 0.57 -0.6 3,633,049 + Dsui_3388 0.58 -0.9 3,633,054 + +1.5 3,633,057 - Dsui_3388 0.58 -0.2 3,633,157 - Dsui_3388 0.66 -0.9 3,633,192 + Dsui_3388 0.68 -0.1 3,633,264 + Dsui_3388 0.73 +0.2 3,633,271 + Dsui_3388 0.74 -1.4 3,633,369 + +1.1 3,633,383 - Dsui_3388 0.82 +0.1 3,633,407 + Dsui_3388 0.84 -1.8 3,633,415 - Dsui_3388 0.84 -0.3 3,633,415 - Dsui_3388 0.84 +0.3 3,633,453 + Dsui_3388 0.87 +0.1 3,633,466 + Dsui_3388 0.88 -0.2 3,633,471 + +1.1 3,633,508 + +0.2 3,633,539 - -0.1 3,633,632 - -0.4 3,633,740 - +1.3 3,633,956 + Dsui_3389 0.25 -1.2 3,634,002 - Dsui_3389 0.31 +1.7 3,634,063 - Dsui_3389 0.38 -0.5 3,634,073 - +1.7 3,634,120 + Dsui_3389 0.46 -1.8 3,634,181 + Dsui_3389 0.54 -0.0 3,634,203 - Dsui_3389 0.56 -0.6 3,634,346 - Dsui_3389 0.75 -0.6 3,634,453 - Dsui_3389 0.88 -0.3 3,634,465 + -0.2 3,634,465 + -1.4 3,634,465 + +0.4 3,634,465 + +0.4 3,634,465 + -1.4 3,634,465 + +0.8 3,634,473 - -0.4 3,634,473 - +0.2 3,634,473 - +0.0 3,634,473 - -1.1 3,634,473 - -0.9 3,634,473 - -0.7 3,634,473 - +0.6 3,634,473 - -0.2 3,634,473 - +0.4 3,634,529 + +0.3 3,634,529 + -0.9 3,634,542 + +0.7
Or see this region's nucleotide sequence