Strain Fitness in Dechlorosoma suillum PS around Dsui_3388

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3387 and Dsui_3388 are separated by 222 nucleotidesDsui_3388 and Dsui_3389 are separated by 135 nucleotidesDsui_3389 and Dsui_3390 are separated by 19 nucleotides Dsui_3387: Dsui_3387 - histidine kinase,histidine kinase,MASE1-containing protein, at 3,630,400 to 3,632,037 _3387 Dsui_3388: Dsui_3388 - hypothetical protein, at 3,632,260 to 3,633,627 _3388 Dsui_3389: Dsui_3389 - enoyl-CoA hydratase/carnithine racemase, at 3,633,763 to 3,634,542 _3389 Dsui_3390: Dsui_3390 - hypothetical protein, at 3,634,562 to 3,635,101 _3390 Position (kb) 3632 3633 3634Strain fitness (log2 ratio) -2 -1 0 1at 3632.073 kb on - strandat 3632.164 kb on + strandat 3632.164 kb on + strandat 3632.169 kb on + strandat 3632.177 kb on - strandat 3632.266 kb on - strandat 3632.432 kb on + strand, within Dsui_3388at 3632.482 kb on + strand, within Dsui_3388at 3632.518 kb on + strand, within Dsui_3388at 3632.521 kb on - strand, within Dsui_3388at 3632.521 kb on - strand, within Dsui_3388at 3632.545 kb on - strand, within Dsui_3388at 3632.586 kb on - strand, within Dsui_3388at 3632.612 kb on - strand, within Dsui_3388at 3632.686 kb on + strand, within Dsui_3388at 3632.726 kb on + strand, within Dsui_3388at 3632.817 kb on + strand, within Dsui_3388at 3632.845 kb on + strand, within Dsui_3388at 3632.853 kb on - strand, within Dsui_3388at 3632.927 kb on + strand, within Dsui_3388at 3632.937 kb on + strand, within Dsui_3388at 3633.010 kb on - strand, within Dsui_3388at 3633.043 kb on - strand, within Dsui_3388at 3633.049 kb on + strand, within Dsui_3388at 3633.054 kb on + strandat 3633.057 kb on - strand, within Dsui_3388at 3633.157 kb on - strand, within Dsui_3388at 3633.192 kb on + strand, within Dsui_3388at 3633.264 kb on + strand, within Dsui_3388at 3633.271 kb on + strand, within Dsui_3388at 3633.369 kb on + strandat 3633.383 kb on - strand, within Dsui_3388at 3633.407 kb on + strand, within Dsui_3388at 3633.415 kb on - strand, within Dsui_3388at 3633.415 kb on - strand, within Dsui_3388at 3633.453 kb on + strand, within Dsui_3388at 3633.466 kb on + strand, within Dsui_3388at 3633.471 kb on + strandat 3633.508 kb on + strandat 3633.539 kb on - strandat 3633.632 kb on - strandat 3633.740 kb on - strandat 3633.956 kb on + strand, within Dsui_3389at 3634.002 kb on - strand, within Dsui_3389at 3634.063 kb on - strand, within Dsui_3389at 3634.073 kb on - strandat 3634.120 kb on + strand, within Dsui_3389at 3634.181 kb on + strand, within Dsui_3389at 3634.203 kb on - strand, within Dsui_3389at 3634.346 kb on - strand, within Dsui_3389at 3634.453 kb on - strand, within Dsui_3389at 3634.465 kb on + strandat 3634.465 kb on + strandat 3634.465 kb on + strandat 3634.465 kb on + strandat 3634.465 kb on + strandat 3634.465 kb on + strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.473 kb on - strandat 3634.529 kb on + strandat 3634.529 kb on + strandat 3634.542 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,632,073 - -0.8
3,632,164 + +1.1
3,632,164 + +0.3
3,632,169 + -0.2
3,632,177 - -0.7
3,632,266 - -1.5
3,632,432 + Dsui_3388 0.13 +0.9
3,632,482 + Dsui_3388 0.16 +0.9
3,632,518 + Dsui_3388 0.19 -1.2
3,632,521 - Dsui_3388 0.19 +0.4
3,632,521 - Dsui_3388 0.19 +0.1
3,632,545 - Dsui_3388 0.21 -0.1
3,632,586 - Dsui_3388 0.24 +0.1
3,632,612 - Dsui_3388 0.26 -0.1
3,632,686 + Dsui_3388 0.31 -0.7
3,632,726 + Dsui_3388 0.34 +0.8
3,632,817 + Dsui_3388 0.41 +0.9
3,632,845 + Dsui_3388 0.43 -0.1
3,632,853 - Dsui_3388 0.43 -0.3
3,632,927 + Dsui_3388 0.49 +0.4
3,632,937 + Dsui_3388 0.49 -0.4
3,633,010 - Dsui_3388 0.55 -1.2
3,633,043 - Dsui_3388 0.57 -0.6
3,633,049 + Dsui_3388 0.58 -0.9
3,633,054 + +1.5
3,633,057 - Dsui_3388 0.58 -0.2
3,633,157 - Dsui_3388 0.66 -0.9
3,633,192 + Dsui_3388 0.68 -0.1
3,633,264 + Dsui_3388 0.73 +0.2
3,633,271 + Dsui_3388 0.74 -1.4
3,633,369 + +1.1
3,633,383 - Dsui_3388 0.82 +0.1
3,633,407 + Dsui_3388 0.84 -1.8
3,633,415 - Dsui_3388 0.84 -0.3
3,633,415 - Dsui_3388 0.84 +0.3
3,633,453 + Dsui_3388 0.87 +0.1
3,633,466 + Dsui_3388 0.88 -0.2
3,633,471 + +1.1
3,633,508 + +0.2
3,633,539 - -0.1
3,633,632 - -0.4
3,633,740 - +1.3
3,633,956 + Dsui_3389 0.25 -1.2
3,634,002 - Dsui_3389 0.31 +1.7
3,634,063 - Dsui_3389 0.38 -0.5
3,634,073 - +1.7
3,634,120 + Dsui_3389 0.46 -1.8
3,634,181 + Dsui_3389 0.54 -0.0
3,634,203 - Dsui_3389 0.56 -0.6
3,634,346 - Dsui_3389 0.75 -0.6
3,634,453 - Dsui_3389 0.88 -0.3
3,634,465 + -0.2
3,634,465 + -1.4
3,634,465 + +0.4
3,634,465 + +0.4
3,634,465 + -1.4
3,634,465 + +0.8
3,634,473 - -0.4
3,634,473 - +0.2
3,634,473 - +0.0
3,634,473 - -1.1
3,634,473 - -0.9
3,634,473 - -0.7
3,634,473 - +0.6
3,634,473 - -0.2
3,634,473 - +0.4
3,634,529 + +0.3
3,634,529 + -0.9
3,634,542 + +0.7

Or see this region's nucleotide sequence