Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3303 and Dsui_3304 are separated by 1 nucleotides Dsui_3304 and Dsui_3305 overlap by 4 nucleotides Dsui_3305 and Dsui_3306 overlap by 4 nucleotides
Dsui_3303: Dsui_3303 - ferredoxin-type protein, NapH/MauN family, at 3,544,891 to 3,545,856
_3303
Dsui_3304: Dsui_3304 - NADH:ubiquinone oxidoreductase chain I-like protein, at 3,545,858 to 3,546,730
_3304
Dsui_3305: Dsui_3305 - parallel beta-helix repeat (two copies), at 3,546,727 to 3,548,118
_3305
Dsui_3306: Dsui_3306 - hypothetical protein, at 3,548,115 to 3,549,098
_3306
Position (kb)
3546
3547
3548
3549 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3545.811 kb on + strand at 3545.822 kb on + strand at 3545.878 kb on - strand at 3546.069 kb on - strand, within Dsui_3304 at 3546.069 kb on - strand, within Dsui_3304 at 3546.107 kb on + strand, within Dsui_3304 at 3546.115 kb on - strand, within Dsui_3304 at 3546.115 kb on - strand, within Dsui_3304 at 3546.160 kb on - strand, within Dsui_3304 at 3546.168 kb on + strand, within Dsui_3304 at 3546.168 kb on + strand, within Dsui_3304 at 3546.168 kb on + strand, within Dsui_3304 at 3546.181 kb on - strand, within Dsui_3304 at 3546.191 kb on + strand, within Dsui_3304 at 3546.202 kb on + strand, within Dsui_3304 at 3546.210 kb on - strand, within Dsui_3304 at 3546.212 kb on + strand, within Dsui_3304 at 3546.220 kb on - strand, within Dsui_3304 at 3546.300 kb on - strand, within Dsui_3304 at 3546.300 kb on - strand, within Dsui_3304 at 3546.300 kb on - strand, within Dsui_3304 at 3546.360 kb on + strand at 3546.427 kb on - strand, within Dsui_3304 at 3546.438 kb on - strand, within Dsui_3304 at 3546.440 kb on - strand, within Dsui_3304 at 3546.587 kb on + strand, within Dsui_3304 at 3546.601 kb on + strand, within Dsui_3304 at 3546.652 kb on - strand at 3546.662 kb on - strand at 3546.708 kb on - strand at 3546.742 kb on - strand at 3546.801 kb on - strand at 3546.867 kb on - strand, within Dsui_3305 at 3546.904 kb on - strand, within Dsui_3305 at 3546.948 kb on + strand at 3547.025 kb on + strand, within Dsui_3305 at 3547.041 kb on + strand, within Dsui_3305 at 3547.297 kb on - strand, within Dsui_3305 at 3547.303 kb on - strand, within Dsui_3305 at 3547.305 kb on + strand, within Dsui_3305 at 3547.374 kb on + strand, within Dsui_3305 at 3547.423 kb on - strand, within Dsui_3305 at 3547.527 kb on + strand, within Dsui_3305 at 3547.581 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.658 kb on - strand, within Dsui_3305 at 3547.706 kb on - strand, within Dsui_3305 at 3547.721 kb on - strand, within Dsui_3305 at 3547.721 kb on - strand, within Dsui_3305 at 3547.749 kb on - strand, within Dsui_3305 at 3547.804 kb on + strand, within Dsui_3305 at 3547.812 kb on + strand, within Dsui_3305 at 3547.812 kb on - strand, within Dsui_3305 at 3547.818 kb on + strand, within Dsui_3305 at 3547.888 kb on - strand, within Dsui_3305 at 3548.165 kb on + strand at 3548.212 kb on + strand at 3548.220 kb on - strand, within Dsui_3306 at 3548.290 kb on + strand, within Dsui_3306 at 3548.332 kb on - strand, within Dsui_3306 at 3548.410 kb on - strand, within Dsui_3306 at 3548.479 kb on - strand, within Dsui_3306 at 3548.531 kb on + strand, within Dsui_3306 at 3548.541 kb on + strand, within Dsui_3306 at 3548.649 kb on + strand, within Dsui_3306 at 3548.654 kb on + strand, within Dsui_3306 at 3548.677 kb on - strand, within Dsui_3306 at 3548.677 kb on - strand, within Dsui_3306 at 3548.754 kb on - strand, within Dsui_3306 at 3548.784 kb on + strand, within Dsui_3306 at 3548.792 kb on - strand, within Dsui_3306 at 3548.814 kb on - strand, within Dsui_3306 at 3548.817 kb on - strand, within Dsui_3306 at 3548.828 kb on + strand, within Dsui_3306 at 3548.841 kb on - strand, within Dsui_3306 at 3548.971 kb on + strand, within Dsui_3306 at 3548.998 kb on - strand, within Dsui_3306
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,545,811 + +0.1 3,545,822 + -0.4 3,545,878 - -0.0 3,546,069 - Dsui_3304 0.24 -1.7 3,546,069 - Dsui_3304 0.24 -1.5 3,546,107 + Dsui_3304 0.29 -1.2 3,546,115 - Dsui_3304 0.29 -2.0 3,546,115 - Dsui_3304 0.29 -1.7 3,546,160 - Dsui_3304 0.35 -3.2 3,546,168 + Dsui_3304 0.36 -1.1 3,546,168 + Dsui_3304 0.36 -1.6 3,546,168 + Dsui_3304 0.36 -3.9 3,546,181 - Dsui_3304 0.37 -1.4 3,546,191 + Dsui_3304 0.38 -0.3 3,546,202 + Dsui_3304 0.39 -2.0 3,546,210 - Dsui_3304 0.40 -1.5 3,546,212 + Dsui_3304 0.41 -3.0 3,546,220 - Dsui_3304 0.41 -1.6 3,546,300 - Dsui_3304 0.51 -0.7 3,546,300 - Dsui_3304 0.51 -1.9 3,546,300 - Dsui_3304 0.51 -0.1 3,546,360 + -1.1 3,546,427 - Dsui_3304 0.65 -2.2 3,546,438 - Dsui_3304 0.66 -1.8 3,546,440 - Dsui_3304 0.67 -1.9 3,546,587 + Dsui_3304 0.84 -2.3 3,546,601 + Dsui_3304 0.85 -1.3 3,546,652 - -0.9 3,546,662 - -0.2 3,546,708 - -0.8 3,546,742 - -0.1 3,546,801 - -2.2 3,546,867 - Dsui_3305 0.10 -1.7 3,546,904 - Dsui_3305 0.13 -2.0 3,546,948 + +0.7 3,547,025 + Dsui_3305 0.21 -1.4 3,547,041 + Dsui_3305 0.23 -0.9 3,547,297 - Dsui_3305 0.41 -2.8 3,547,303 - Dsui_3305 0.41 -1.3 3,547,305 + Dsui_3305 0.42 -0.8 3,547,374 + Dsui_3305 0.46 -2.6 3,547,423 - Dsui_3305 0.50 -2.1 3,547,527 + Dsui_3305 0.57 -1.9 3,547,581 + Dsui_3305 0.61 -2.7 3,547,650 + Dsui_3305 0.66 -3.2 3,547,650 + Dsui_3305 0.66 -2.5 3,547,650 + Dsui_3305 0.66 -0.3 3,547,658 - Dsui_3305 0.67 -1.2 3,547,706 - Dsui_3305 0.70 -2.2 3,547,721 - Dsui_3305 0.71 -2.0 3,547,721 - Dsui_3305 0.71 -1.8 3,547,749 - Dsui_3305 0.73 -2.5 3,547,804 + Dsui_3305 0.77 -0.6 3,547,812 + Dsui_3305 0.78 -0.6 3,547,812 - Dsui_3305 0.78 -2.2 3,547,818 + Dsui_3305 0.78 -1.3 3,547,888 - Dsui_3305 0.83 -0.9 3,548,165 + -1.5 3,548,212 + -1.9 3,548,220 - Dsui_3306 0.11 -3.5 3,548,290 + Dsui_3306 0.18 -1.5 3,548,332 - Dsui_3306 0.22 -1.7 3,548,410 - Dsui_3306 0.30 -2.4 3,548,479 - Dsui_3306 0.37 -0.5 3,548,531 + Dsui_3306 0.42 -1.7 3,548,541 + Dsui_3306 0.43 +0.3 3,548,649 + Dsui_3306 0.54 -0.9 3,548,654 + Dsui_3306 0.55 -1.0 3,548,677 - Dsui_3306 0.57 -2.2 3,548,677 - Dsui_3306 0.57 -2.7 3,548,754 - Dsui_3306 0.65 -2.1 3,548,784 + Dsui_3306 0.68 -0.1 3,548,792 - Dsui_3306 0.69 -2.1 3,548,814 - Dsui_3306 0.71 -1.8 3,548,817 - Dsui_3306 0.71 -1.1 3,548,828 + Dsui_3306 0.72 -1.2 3,548,841 - Dsui_3306 0.74 -0.6 3,548,971 + Dsui_3306 0.87 -1.0 3,548,998 - Dsui_3306 0.90 -1.9
Or see this region's nucleotide sequence