Strain Fitness in Dechlorosoma suillum PS around Dsui_3305

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3303 and Dsui_3304 are separated by 1 nucleotidesDsui_3304 and Dsui_3305 overlap by 4 nucleotidesDsui_3305 and Dsui_3306 overlap by 4 nucleotides Dsui_3303: Dsui_3303 - ferredoxin-type protein, NapH/MauN family, at 3,544,891 to 3,545,856 _3303 Dsui_3304: Dsui_3304 - NADH:ubiquinone oxidoreductase chain I-like protein, at 3,545,858 to 3,546,730 _3304 Dsui_3305: Dsui_3305 - parallel beta-helix repeat (two copies), at 3,546,727 to 3,548,118 _3305 Dsui_3306: Dsui_3306 - hypothetical protein, at 3,548,115 to 3,549,098 _3306 Position (kb) 3546 3547 3548 3549Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3545.811 kb on + strandat 3545.822 kb on + strandat 3545.878 kb on - strandat 3546.069 kb on - strand, within Dsui_3304at 3546.069 kb on - strand, within Dsui_3304at 3546.107 kb on + strand, within Dsui_3304at 3546.115 kb on - strand, within Dsui_3304at 3546.115 kb on - strand, within Dsui_3304at 3546.160 kb on - strand, within Dsui_3304at 3546.168 kb on + strand, within Dsui_3304at 3546.168 kb on + strand, within Dsui_3304at 3546.168 kb on + strand, within Dsui_3304at 3546.181 kb on - strand, within Dsui_3304at 3546.191 kb on + strand, within Dsui_3304at 3546.202 kb on + strand, within Dsui_3304at 3546.210 kb on - strand, within Dsui_3304at 3546.212 kb on + strand, within Dsui_3304at 3546.220 kb on - strand, within Dsui_3304at 3546.300 kb on - strand, within Dsui_3304at 3546.300 kb on - strand, within Dsui_3304at 3546.300 kb on - strand, within Dsui_3304at 3546.360 kb on + strandat 3546.427 kb on - strand, within Dsui_3304at 3546.438 kb on - strand, within Dsui_3304at 3546.440 kb on - strand, within Dsui_3304at 3546.587 kb on + strand, within Dsui_3304at 3546.601 kb on + strand, within Dsui_3304at 3546.652 kb on - strandat 3546.662 kb on - strandat 3546.708 kb on - strandat 3546.742 kb on - strandat 3546.801 kb on - strandat 3546.867 kb on - strand, within Dsui_3305at 3546.904 kb on - strand, within Dsui_3305at 3546.948 kb on + strandat 3547.025 kb on + strand, within Dsui_3305at 3547.041 kb on + strand, within Dsui_3305at 3547.297 kb on - strand, within Dsui_3305at 3547.303 kb on - strand, within Dsui_3305at 3547.305 kb on + strand, within Dsui_3305at 3547.374 kb on + strand, within Dsui_3305at 3547.423 kb on - strand, within Dsui_3305at 3547.527 kb on + strand, within Dsui_3305at 3547.581 kb on + strand, within Dsui_3305at 3547.650 kb on + strand, within Dsui_3305at 3547.650 kb on + strand, within Dsui_3305at 3547.650 kb on + strand, within Dsui_3305at 3547.658 kb on - strand, within Dsui_3305at 3547.706 kb on - strand, within Dsui_3305at 3547.721 kb on - strand, within Dsui_3305at 3547.721 kb on - strand, within Dsui_3305at 3547.749 kb on - strand, within Dsui_3305at 3547.804 kb on + strand, within Dsui_3305at 3547.812 kb on + strand, within Dsui_3305at 3547.812 kb on - strand, within Dsui_3305at 3547.818 kb on + strand, within Dsui_3305at 3547.888 kb on - strand, within Dsui_3305at 3548.165 kb on + strandat 3548.212 kb on + strandat 3548.220 kb on - strand, within Dsui_3306at 3548.290 kb on + strand, within Dsui_3306at 3548.332 kb on - strand, within Dsui_3306at 3548.410 kb on - strand, within Dsui_3306at 3548.479 kb on - strand, within Dsui_3306at 3548.531 kb on + strand, within Dsui_3306at 3548.541 kb on + strand, within Dsui_3306at 3548.649 kb on + strand, within Dsui_3306at 3548.654 kb on + strand, within Dsui_3306at 3548.677 kb on - strand, within Dsui_3306at 3548.677 kb on - strand, within Dsui_3306at 3548.754 kb on - strand, within Dsui_3306at 3548.784 kb on + strand, within Dsui_3306at 3548.792 kb on - strand, within Dsui_3306at 3548.814 kb on - strand, within Dsui_3306at 3548.817 kb on - strand, within Dsui_3306at 3548.828 kb on + strand, within Dsui_3306at 3548.841 kb on - strand, within Dsui_3306at 3548.971 kb on + strand, within Dsui_3306at 3548.998 kb on - strand, within Dsui_3306

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,545,811 + +0.1
3,545,822 + -0.4
3,545,878 - -0.0
3,546,069 - Dsui_3304 0.24 -1.7
3,546,069 - Dsui_3304 0.24 -1.5
3,546,107 + Dsui_3304 0.29 -1.2
3,546,115 - Dsui_3304 0.29 -2.0
3,546,115 - Dsui_3304 0.29 -1.7
3,546,160 - Dsui_3304 0.35 -3.2
3,546,168 + Dsui_3304 0.36 -1.1
3,546,168 + Dsui_3304 0.36 -1.6
3,546,168 + Dsui_3304 0.36 -3.9
3,546,181 - Dsui_3304 0.37 -1.4
3,546,191 + Dsui_3304 0.38 -0.3
3,546,202 + Dsui_3304 0.39 -2.0
3,546,210 - Dsui_3304 0.40 -1.5
3,546,212 + Dsui_3304 0.41 -3.0
3,546,220 - Dsui_3304 0.41 -1.6
3,546,300 - Dsui_3304 0.51 -0.7
3,546,300 - Dsui_3304 0.51 -1.9
3,546,300 - Dsui_3304 0.51 -0.1
3,546,360 + -1.1
3,546,427 - Dsui_3304 0.65 -2.2
3,546,438 - Dsui_3304 0.66 -1.8
3,546,440 - Dsui_3304 0.67 -1.9
3,546,587 + Dsui_3304 0.84 -2.3
3,546,601 + Dsui_3304 0.85 -1.3
3,546,652 - -0.9
3,546,662 - -0.2
3,546,708 - -0.8
3,546,742 - -0.1
3,546,801 - -2.2
3,546,867 - Dsui_3305 0.10 -1.7
3,546,904 - Dsui_3305 0.13 -2.0
3,546,948 + +0.7
3,547,025 + Dsui_3305 0.21 -1.4
3,547,041 + Dsui_3305 0.23 -0.9
3,547,297 - Dsui_3305 0.41 -2.8
3,547,303 - Dsui_3305 0.41 -1.3
3,547,305 + Dsui_3305 0.42 -0.8
3,547,374 + Dsui_3305 0.46 -2.6
3,547,423 - Dsui_3305 0.50 -2.1
3,547,527 + Dsui_3305 0.57 -1.9
3,547,581 + Dsui_3305 0.61 -2.7
3,547,650 + Dsui_3305 0.66 -3.2
3,547,650 + Dsui_3305 0.66 -2.5
3,547,650 + Dsui_3305 0.66 -0.3
3,547,658 - Dsui_3305 0.67 -1.2
3,547,706 - Dsui_3305 0.70 -2.2
3,547,721 - Dsui_3305 0.71 -2.0
3,547,721 - Dsui_3305 0.71 -1.8
3,547,749 - Dsui_3305 0.73 -2.5
3,547,804 + Dsui_3305 0.77 -0.6
3,547,812 + Dsui_3305 0.78 -0.6
3,547,812 - Dsui_3305 0.78 -2.2
3,547,818 + Dsui_3305 0.78 -1.3
3,547,888 - Dsui_3305 0.83 -0.9
3,548,165 + -1.5
3,548,212 + -1.9
3,548,220 - Dsui_3306 0.11 -3.5
3,548,290 + Dsui_3306 0.18 -1.5
3,548,332 - Dsui_3306 0.22 -1.7
3,548,410 - Dsui_3306 0.30 -2.4
3,548,479 - Dsui_3306 0.37 -0.5
3,548,531 + Dsui_3306 0.42 -1.7
3,548,541 + Dsui_3306 0.43 +0.3
3,548,649 + Dsui_3306 0.54 -0.9
3,548,654 + Dsui_3306 0.55 -1.0
3,548,677 - Dsui_3306 0.57 -2.2
3,548,677 - Dsui_3306 0.57 -2.7
3,548,754 - Dsui_3306 0.65 -2.1
3,548,784 + Dsui_3306 0.68 -0.1
3,548,792 - Dsui_3306 0.69 -2.1
3,548,814 - Dsui_3306 0.71 -1.8
3,548,817 - Dsui_3306 0.71 -1.1
3,548,828 + Dsui_3306 0.72 -1.2
3,548,841 - Dsui_3306 0.74 -0.6
3,548,971 + Dsui_3306 0.87 -1.0
3,548,998 - Dsui_3306 0.90 -1.9

Or see this region's nucleotide sequence