Strain Fitness in Dechlorosoma suillum PS around Dsui_3262

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3261 and Dsui_3262 are separated by 16 nucleotidesDsui_3262 and Dsui_3263 are separated by 148 nucleotidesDsui_3263 and Dsui_3264 are separated by 20 nucleotides Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534 _3261 Dsui_3262: Dsui_3262 - adenylate kinase family protein, at 3,502,551 to 3,503,204 _3262 Dsui_3263: Dsui_3263 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,503,353 to 3,504,132 _3263 Dsui_3264: Dsui_3264 - hypothetical protein, at 3,504,153 to 3,504,329 _3264 Position (kb) 3502 3503 3504Strain fitness (log2 ratio) -1 0 1 2at 3501.567 kb on + strand, within Dsui_3261at 3501.575 kb on - strand, within Dsui_3261at 3501.579 kb on + strand, within Dsui_3261at 3501.585 kb on - strand, within Dsui_3261at 3501.587 kb on - strand, within Dsui_3261at 3501.602 kb on - strand, within Dsui_3261at 3501.656 kb on - strand, within Dsui_3261at 3501.776 kb on + strand, within Dsui_3261at 3501.777 kb on - strand, within Dsui_3261at 3501.808 kb on + strandat 3501.830 kb on - strand, within Dsui_3261at 3502.015 kb on + strand, within Dsui_3261at 3502.016 kb on + strand, within Dsui_3261at 3502.223 kb on + strand, within Dsui_3261at 3502.323 kb on - strand, within Dsui_3261at 3502.363 kb on - strand, within Dsui_3261at 3502.375 kb on + strand, within Dsui_3261at 3502.483 kb on + strandat 3502.557 kb on - strandat 3503.242 kb on - strandat 3503.285 kb on - strandat 3503.285 kb on - strandat 3503.286 kb on - strandat 3503.300 kb on + strandat 3503.308 kb on - strandat 3503.308 kb on - strandat 3503.308 kb on - strandat 3503.331 kb on - strandat 3503.333 kb on - strandat 3503.333 kb on - strandat 3504.142 kb on - strandat 3504.167 kb on + strandat 3504.167 kb on + strandat 3504.175 kb on - strand, within Dsui_3264

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,501,567 + Dsui_3261 0.24 +0.2
3,501,575 - Dsui_3261 0.24 -0.3
3,501,579 + Dsui_3261 0.25 -0.1
3,501,585 - Dsui_3261 0.25 -0.7
3,501,587 - Dsui_3261 0.25 +0.4
3,501,602 - Dsui_3261 0.26 -0.3
3,501,656 - Dsui_3261 0.31 -1.7
3,501,776 + Dsui_3261 0.40 -0.7
3,501,777 - Dsui_3261 0.40 -0.6
3,501,808 + +2.0
3,501,830 - Dsui_3261 0.44 +0.6
3,502,015 + Dsui_3261 0.59 -1.1
3,502,016 + Dsui_3261 0.59 -0.7
3,502,223 + Dsui_3261 0.75 -0.8
3,502,323 - Dsui_3261 0.83 -0.2
3,502,363 - Dsui_3261 0.86 -0.8
3,502,375 + Dsui_3261 0.87 -1.6
3,502,483 + -0.9
3,502,557 - -0.4
3,503,242 - +0.7
3,503,285 - +0.2
3,503,285 - -0.7
3,503,286 - -0.1
3,503,300 + +0.2
3,503,308 - +0.3
3,503,308 - -0.0
3,503,308 - +0.0
3,503,331 - +0.2
3,503,333 - +0.3
3,503,333 - +0.1
3,504,142 - +0.4
3,504,167 + +2.0
3,504,167 + +1.0
3,504,175 - Dsui_3264 0.12 +0.1

Or see this region's nucleotide sequence