Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3068 and Dsui_3069 are separated by 52 nucleotides Dsui_3069 and Dsui_3070 are separated by 58 nucleotides Dsui_3070 and Dsui_3071 overlap by 70 nucleotides Dsui_3071 and Dsui_3072 are separated by 97 nucleotides
Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724
_3068
Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343
_3069
Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253
_3070
Dsui_3071: Dsui_3071 - SprA-related family, at 3,286,184 to 3,286,972
_3071
Dsui_3072: Dsui_3072 - DNA repair protein RecN, at 3,287,070 to 3,288,725
_3072
Position (kb)
3285
3286
3287 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3284.707 kb on - strand at 3284.753 kb on + strand at 3284.793 kb on + strand at 3284.793 kb on + strand at 3284.796 kb on + strand at 3284.833 kb on + strand at 3284.834 kb on + strand, within Dsui_3069 at 3284.855 kb on - strand at 3284.869 kb on + strand, within Dsui_3069 at 3284.919 kb on + strand, within Dsui_3069 at 3284.927 kb on - strand at 3284.963 kb on - strand at 3285.202 kb on + strand, within Dsui_3069 at 3285.228 kb on - strand at 3285.263 kb on + strand, within Dsui_3069 at 3285.323 kb on - strand at 3285.390 kb on - strand at 3285.425 kb on + strand at 3285.454 kb on - strand at 3285.521 kb on - strand, within Dsui_3070 at 3285.528 kb on + strand, within Dsui_3070 at 3285.583 kb on - strand, within Dsui_3070 at 3285.601 kb on + strand, within Dsui_3070 at 3285.672 kb on + strand, within Dsui_3070 at 3285.711 kb on - strand, within Dsui_3070 at 3285.769 kb on + strand, within Dsui_3070 at 3285.771 kb on - strand, within Dsui_3070 at 3285.777 kb on - strand, within Dsui_3070 at 3285.777 kb on - strand, within Dsui_3070 at 3285.782 kb on - strand, within Dsui_3070 at 3285.883 kb on + strand, within Dsui_3070 at 3285.890 kb on - strand, within Dsui_3070 at 3285.999 kb on + strand, within Dsui_3070 at 3286.006 kb on - strand, within Dsui_3070 at 3286.342 kb on + strand, within Dsui_3071 at 3286.351 kb on + strand, within Dsui_3071 at 3286.376 kb on - strand, within Dsui_3071 at 3286.497 kb on - strand, within Dsui_3071 at 3286.518 kb on + strand, within Dsui_3071 at 3286.592 kb on - strand, within Dsui_3071 at 3286.640 kb on - strand, within Dsui_3071 at 3286.640 kb on - strand, within Dsui_3071 at 3286.665 kb on + strand, within Dsui_3071 at 3286.684 kb on + strand at 3286.776 kb on - strand, within Dsui_3071 at 3286.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,284,707 - -1.3 3,284,753 + +0.2 3,284,793 + -0.5 3,284,793 + -0.8 3,284,796 + -0.3 3,284,833 + -0.2 3,284,834 + Dsui_3069 0.10 +0.1 3,284,855 - +2.1 3,284,869 + Dsui_3069 0.16 -0.9 3,284,919 + Dsui_3069 0.25 -0.3 3,284,927 - +0.5 3,284,963 - +1.1 3,285,202 + Dsui_3069 0.75 +0.3 3,285,228 - +2.1 3,285,263 + Dsui_3069 0.86 -1.3 3,285,323 - +0.1 3,285,390 - -0.4 3,285,425 + +0.2 3,285,454 - +0.1 3,285,521 - Dsui_3070 0.14 -0.4 3,285,528 + Dsui_3070 0.15 +0.4 3,285,583 - Dsui_3070 0.21 +0.7 3,285,601 + Dsui_3070 0.23 +0.4 3,285,672 + Dsui_3070 0.32 -0.8 3,285,711 - Dsui_3070 0.36 +1.9 3,285,769 + Dsui_3070 0.43 -0.3 3,285,771 - Dsui_3070 0.43 -0.2 3,285,777 - Dsui_3070 0.44 -0.6 3,285,777 - Dsui_3070 0.44 +0.1 3,285,782 - Dsui_3070 0.45 -0.2 3,285,883 + Dsui_3070 0.56 -0.9 3,285,890 - Dsui_3070 0.57 +0.5 3,285,999 + Dsui_3070 0.70 -0.9 3,286,006 - Dsui_3070 0.71 -0.3 3,286,342 + Dsui_3071 0.20 +0.4 3,286,351 + Dsui_3071 0.21 +0.3 3,286,376 - Dsui_3071 0.24 -0.3 3,286,497 - Dsui_3071 0.40 -0.2 3,286,518 + Dsui_3071 0.42 -0.3 3,286,592 - Dsui_3071 0.52 -1.4 3,286,640 - Dsui_3071 0.58 -2.4 3,286,640 - Dsui_3071 0.58 -1.2 3,286,665 + Dsui_3071 0.61 +0.2 3,286,684 + +3.1 3,286,776 - Dsui_3071 0.75 -1.7 3,286,988 - -0.7
Or see this region's nucleotide sequence