Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3066 and Dsui_3067 are separated by 3 nucleotides Dsui_3067 and Dsui_3068 are separated by 94 nucleotides Dsui_3068 and Dsui_3069 are separated by 52 nucleotides Dsui_3069 and Dsui_3070 are separated by 58 nucleotides
Dsui_3066: Dsui_3066 - dihydrodipicolinate reductase, at 3,282,819 to 3,283,625
_3066
Dsui_3067: Dsui_3067 - small protein A (tmRNA-binding), at 3,283,629 to 3,284,159
_3067
Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724
_3068
Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343
_3069
Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253
_3070
Position (kb)
3284
3285 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3283.421 kb on + strand at 3283.429 kb on - strand, within Dsui_3066 at 3283.429 kb on - strand, within Dsui_3066 at 3283.459 kb on + strand at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.467 kb on - strand, within Dsui_3066 at 3283.550 kb on + strand at 3283.550 kb on + strand at 3283.580 kb on - strand at 3283.647 kb on - strand at 3283.697 kb on - strand, within Dsui_3067 at 3283.725 kb on - strand, within Dsui_3067 at 3284.245 kb on + strand at 3284.707 kb on - strand at 3284.753 kb on + strand at 3284.793 kb on + strand at 3284.793 kb on + strand at 3284.796 kb on + strand at 3284.833 kb on + strand at 3284.834 kb on + strand, within Dsui_3069 at 3284.855 kb on - strand at 3284.869 kb on + strand, within Dsui_3069 at 3284.919 kb on + strand, within Dsui_3069 at 3284.927 kb on - strand at 3284.963 kb on - strand at 3285.202 kb on + strand, within Dsui_3069 at 3285.228 kb on - strand at 3285.263 kb on + strand, within Dsui_3069 at 3285.323 kb on - strand at 3285.390 kb on - strand at 3285.425 kb on + strand at 3285.454 kb on - strand at 3285.521 kb on - strand, within Dsui_3070 at 3285.528 kb on + strand, within Dsui_3070 at 3285.583 kb on - strand, within Dsui_3070 at 3285.601 kb on + strand, within Dsui_3070 at 3285.672 kb on + strand, within Dsui_3070 at 3285.711 kb on - strand, within Dsui_3070
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,283,421 + +1.1 3,283,429 - Dsui_3066 0.76 -0.2 3,283,429 - Dsui_3066 0.76 -0.1 3,283,459 + +2.1 3,283,467 - Dsui_3066 0.80 -2.3 3,283,467 - Dsui_3066 0.80 -1.5 3,283,467 - Dsui_3066 0.80 -0.5 3,283,467 - Dsui_3066 0.80 -0.6 3,283,550 + -1.6 3,283,550 + -0.4 3,283,580 - -0.6 3,283,647 - -0.2 3,283,697 - Dsui_3067 0.13 +0.2 3,283,725 - Dsui_3067 0.18 -0.5 3,284,245 + +1.1 3,284,707 - -1.3 3,284,753 + +0.2 3,284,793 + -0.5 3,284,793 + -0.8 3,284,796 + -0.3 3,284,833 + -0.2 3,284,834 + Dsui_3069 0.10 +0.1 3,284,855 - +2.1 3,284,869 + Dsui_3069 0.16 -0.9 3,284,919 + Dsui_3069 0.25 -0.3 3,284,927 - +0.5 3,284,963 - +1.1 3,285,202 + Dsui_3069 0.75 +0.3 3,285,228 - +2.1 3,285,263 + Dsui_3069 0.86 -1.3 3,285,323 - +0.1 3,285,390 - -0.4 3,285,425 + +0.2 3,285,454 - +0.1 3,285,521 - Dsui_3070 0.14 -0.4 3,285,528 + Dsui_3070 0.15 +0.4 3,285,583 - Dsui_3070 0.21 +0.7 3,285,601 + Dsui_3070 0.23 +0.4 3,285,672 + Dsui_3070 0.32 -0.8 3,285,711 - Dsui_3070 0.36 +1.9
Or see this region's nucleotide sequence