Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2959 and Dsui_2960 are separated by 9 nucleotides Dsui_2960 and Dsui_2961 are separated by 3 nucleotides Dsui_2961 and Dsui_2962 overlap by 11 nucleotides
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Dsui_2961: Dsui_2961 - precorrin isomerase, at 3,169,057 to 3,169,737
_2961
Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923
_2962
Position (kb)
3169
3170 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3168.100 kb on - strand at 3168.321 kb on + strand, within Dsui_2960 at 3168.321 kb on + strand, within Dsui_2960 at 3168.329 kb on - strand, within Dsui_2960 at 3168.455 kb on + strand, within Dsui_2960 at 3168.458 kb on - strand, within Dsui_2960 at 3168.585 kb on - strand, within Dsui_2960 at 3168.642 kb on + strand, within Dsui_2960 at 3168.788 kb on + strand, within Dsui_2960 at 3169.054 kb on + strand at 3169.089 kb on + strand at 3169.097 kb on - strand at 3169.198 kb on + strand, within Dsui_2961 at 3169.278 kb on + strand, within Dsui_2961 at 3169.286 kb on - strand, within Dsui_2961 at 3169.404 kb on + strand, within Dsui_2961 at 3169.560 kb on + strand at 3169.640 kb on - strand at 3169.703 kb on + strand at 3169.716 kb on - strand at 3169.754 kb on + strand at 3169.754 kb on + strand at 3169.886 kb on - strand, within Dsui_2962 at 3169.886 kb on - strand, within Dsui_2962 at 3169.943 kb on - strand, within Dsui_2962 at 3170.159 kb on - strand at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.365 kb on + strand, within Dsui_2962 at 3170.429 kb on + strand, within Dsui_2962 at 3170.444 kb on + strand, within Dsui_2962 at 3170.533 kb on + strand, within Dsui_2962 at 3170.578 kb on + strand, within Dsui_2962 at 3170.598 kb on + strand, within Dsui_2962 at 3170.626 kb on - strand at 3170.643 kb on + strand, within Dsui_2962
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,168,100 - +0.3 3,168,321 + Dsui_2960 0.26 -0.0 3,168,321 + Dsui_2960 0.26 -0.4 3,168,329 - Dsui_2960 0.27 -0.9 3,168,455 + Dsui_2960 0.39 -0.1 3,168,458 - Dsui_2960 0.40 -0.7 3,168,585 - Dsui_2960 0.52 -1.8 3,168,642 + Dsui_2960 0.58 +0.4 3,168,788 + Dsui_2960 0.73 -0.4 3,169,054 + +0.5 3,169,089 + -1.2 3,169,097 - -0.9 3,169,198 + Dsui_2961 0.21 +1.2 3,169,278 + Dsui_2961 0.32 +0.3 3,169,286 - Dsui_2961 0.34 +1.5 3,169,404 + Dsui_2961 0.51 +0.0 3,169,560 + +2.1 3,169,640 - -0.9 3,169,703 + -0.5 3,169,716 - -1.1 3,169,754 + +0.7 3,169,754 + -0.5 3,169,886 - Dsui_2962 0.13 -1.0 3,169,886 - Dsui_2962 0.13 -1.1 3,169,943 - Dsui_2962 0.18 -0.7 3,170,159 - +0.5 3,170,250 + Dsui_2962 0.44 +0.2 3,170,250 + Dsui_2962 0.44 -0.4 3,170,250 + Dsui_2962 0.44 -1.2 3,170,258 - +0.5 3,170,258 - +2.1 3,170,258 - +0.5 3,170,365 + Dsui_2962 0.53 -1.2 3,170,429 + Dsui_2962 0.59 -0.0 3,170,444 + Dsui_2962 0.60 -0.3 3,170,533 + Dsui_2962 0.67 +1.3 3,170,578 + Dsui_2962 0.71 -1.4 3,170,598 + Dsui_2962 0.73 -0.2 3,170,626 - +2.1 3,170,643 + Dsui_2962 0.77 +0.4
Or see this region's nucleotide sequence